Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q8X47_RS00990 Genome accession   NZ_CP132061
Coordinates   216177..217160 (+) Length   327 a.a.
NCBI ID   WP_001196486.1    Uniprot ID   A7ZT85
Organism   Escherichia coli strain QML220614     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 211177..222160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X47_RS00970 dppA 212320..213927 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  Q8X47_RS00980 dppB 214235..215254 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  Q8X47_RS00985 dppC 215264..216166 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  Q8X47_RS00990 amiE 216177..217160 (+) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  Q8X47_RS00995 dppF 217157..218161 (+) 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
  Q8X47_RS01000 yhjV 218191..219462 (-) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  Q8X47_RS01005 ldrD 219938..220045 (+) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  Q8X47_RS01010 bcsG 220132..221811 (-) 1680 WP_086977586.1 cellulose biosynthesis protein BcsG -
  Q8X47_RS01015 bcsF 221808..221999 (-) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=795210 Q8X47_RS00990 WP_001196486.1 216177..217160(+) (amiE) [Escherichia coli strain QML220614]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=795210 Q8X47_RS00990 WP_001196486.1 216177..217160(+) (amiE) [Escherichia coli strain QML220614]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404