Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYH72_RS04310 Genome accession   NZ_CP118782
Coordinates   952760..953476 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7072     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 947760..958476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH72_RS04290 (PYH72_04295) - 947946..949031 (-) 1086 WP_096556938.1 YeeE/YedE family protein -
  PYH72_RS04295 (PYH72_04300) - 949265..950212 (+) 948 WP_096556940.1 LacI family DNA-binding transcriptional regulator -
  PYH72_RS04300 (PYH72_04305) - 950268..951755 (+) 1488 WP_096556942.1 sucrose-6-phosphate hydrolase -
  PYH72_RS04305 (PYH72_04310) - 951756..952700 (+) 945 WP_096556944.1 carbohydrate kinase -
  PYH72_RS04310 (PYH72_04315) agrA 952760..953476 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  PYH72_RS04315 (PYH72_04320) agrC 953490..954782 (-) 1293 WP_096586443.1 quorum-sensing sensor histidine kinase AgrC -
  PYH72_RS04320 (PYH72_04325) agrD 954806..954943 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  PYH72_RS04325 (PYH72_04330) - 954945..955511 (-) 567 WP_096586442.1 accessory gene regulator AgrB -
  PYH72_RS04330 - 955903..955983 (+) 81 WP_110161296.1 delta-lysin family phenol-soluble modulin -
  PYH72_RS04335 (PYH72_04335) - 956264..957067 (-) 804 WP_096586441.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=795185 PYH72_RS04310 WP_037542586.1 952760..953476(-) (agrA) [Staphylococcus delphini strain 7072]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=795185 PYH72_RS04310 WP_037542586.1 952760..953476(-) (agrA) [Staphylococcus delphini strain 7072]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATCGAGCTTGCTACCAATGACCCTTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTCTTAGACATTCAATTAGAGTCTGATATTAACGGAATTAAATTAGGGAGCGAAATTCGTAAACACGATCCT
GTCGGGAATATTATTTTTGTGACGAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTCAAAGATGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTGGAAACTCTGGAACTGAAACGTGGGACAAGTTCTGTATACGTGAACTATGATGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCACATTTAGACAATCGTCAAATCGAGTTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGACCGGTTTTTCAGATGTCACAACAGTTATGTGCTGAATAGAAGGAATATAACGAGTGTTG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836