Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PXN04_RS14935 Genome accession   NZ_CP118774
Coordinates   3085835..3086449 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain ASE1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080835..3091449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXN04_RS14920 (PXN04_14920) helD 3081059..3083113 (-) 2055 WP_101699892.1 DNA helicase IV -
  PXN04_RS14925 (PXN04_14925) - 3083239..3083685 (+) 447 WP_016152485.1 YccF domain-containing protein -
  PXN04_RS14930 (PXN04_14930) yccS 3083704..3085857 (+) 2154 WP_029139472.1 YccS family putative transporter -
  PXN04_RS14935 (PXN04_14935) sxy/tfoX 3085835..3086449 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  PXN04_RS14940 (PXN04_14940) sulA 3086666..3087175 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  PXN04_RS14945 (PXN04_14945) ompA 3087533..3088591 (+) 1059 WP_016156137.1 porin OmpA -
  PXN04_RS14950 (PXN04_14950) matP 3088690..3089142 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  PXN04_RS14955 (PXN04_14955) - 3089328..3091088 (+) 1761 WP_080858512.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=795120 PXN04_RS14935 WP_016152483.1 3085835..3086449(-) (sxy/tfoX) [Citrobacter braakii strain ASE1]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=795120 PXN04_RS14935 WP_016152483.1 3085835..3086449(-) (sxy/tfoX) [Citrobacter braakii strain ASE1]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681