Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   PWO55_RS17830 Genome accession   NZ_CP118770
Coordinates   3566949..3568094 (+) Length   381 a.a.
NCBI ID   WP_088037228.1    Uniprot ID   -
Organism   Bacillus velezensis strain IMD4036     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3561949..3573094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS17810 (PWO55_17770) - 3562424..3563139 (-) 716 Protein_3474 Crp/Fnr family transcriptional regulator -
  PWO55_RS17815 (PWO55_17775) narK 3563237..3564427 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  PWO55_RS17820 (PWO55_17780) argS 3564562..3566232 (-) 1671 WP_207579576.1 arginine--tRNA ligase -
  PWO55_RS17825 (PWO55_17785) - 3566229..3566657 (-) 429 WP_207579577.1 DUF1934 domain-containing protein -
  PWO55_RS17830 (PWO55_17790) rapF 3566949..3568094 (+) 1146 WP_088037228.1 tetratricopeptide repeat protein Regulator
  PWO55_RS17835 (PWO55_17795) - 3568078..3568197 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  PWO55_RS17840 (PWO55_17800) - 3568396..3568599 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  PWO55_RS17845 (PWO55_17805) - 3568613..3568816 (+) 204 WP_003151062.1 hypothetical protein -
  PWO55_RS17850 (PWO55_17815) - 3569224..3569505 (+) 282 WP_014306021.1 hypothetical protein -
  PWO55_RS17855 (PWO55_17820) - 3569549..3570061 (+) 513 WP_032859656.1 stage II sporulation protein M -
  PWO55_RS17860 (PWO55_17825) - 3570652..3570870 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  PWO55_RS17865 (PWO55_17830) speB 3571040..3571912 (-) 873 WP_003151054.1 agmatinase -
  PWO55_RS17870 (PWO55_17835) speE 3571972..3572802 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45325.46 Da        Isoelectric Point: 4.9264

>NTDB_id=795082 PWO55_RS17830 WP_088037228.1 3566949..3568094(+) (rapF) [Bacillus velezensis strain IMD4036]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=795082 PWO55_RS17830 WP_088037228.1 3566949..3568094(+) (rapF) [Bacillus velezensis strain IMD4036]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTATCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACATGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAAAGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53