Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PWO55_RS07580 Genome accession   NZ_CP118770
Coordinates   1507583..1508362 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain IMD4036     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502583..1513362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS07560 (PWO55_07560) trmFO 1503270..1504577 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PWO55_RS07565 (PWO55_07565) xerC 1504647..1505564 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  PWO55_RS07570 (PWO55_07570) hslV 1505580..1506125 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  PWO55_RS07575 (PWO55_07575) hslU 1506142..1507545 (+) 1404 WP_207579514.1 HslU--HslV peptidase ATPase subunit -
  PWO55_RS07580 (PWO55_07580) codY 1507583..1508362 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PWO55_RS07585 (PWO55_07585) flgB 1508716..1509105 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PWO55_RS07590 (PWO55_07590) flgC 1509105..1509557 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PWO55_RS07595 (PWO55_07595) fliE 1509568..1509888 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PWO55_RS07600 (PWO55_07600) fliF 1509931..1511541 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  PWO55_RS07605 (PWO55_07605) fliG 1511554..1512570 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PWO55_RS07610 (PWO55_07610) fliH 1512563..1513318 (+) 756 WP_014305003.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=795043 PWO55_RS07580 WP_003154263.1 1507583..1508362(+) (codY) [Bacillus velezensis strain IMD4036]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=795043 PWO55_RS07580 WP_003154263.1 1507583..1508362(+) (codY) [Bacillus velezensis strain IMD4036]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471