Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PWO55_RS04795 Genome accession   NZ_CP118770
Coordinates   935049..935630 (+) Length   193 a.a.
NCBI ID   WP_409017729.1    Uniprot ID   -
Organism   Bacillus velezensis strain IMD4036     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 930049..940630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS04770 - 930549..931064 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  PWO55_RS04775 - 931308..932048 (-) 741 Protein_902 protoglobin domain-containing protein -
  PWO55_RS04780 (PWO55_04790) - 931964..933487 (-) 1524 WP_025852060.1 FAD-dependent oxidoreductase -
  PWO55_RS04785 (PWO55_04795) - 933612..934469 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  PWO55_RS04790 (PWO55_04800) - 934500..934733 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  PWO55_RS04795 (PWO55_04805) comK 935049..935630 (+) 582 WP_409017729.1 competence protein ComK Regulator
  PWO55_RS04800 (PWO55_04810) - 935775..936143 (+) 369 WP_045207079.1 iron chaperone -
  PWO55_RS04805 (PWO55_04815) - 936170..936541 (+) 372 WP_003155172.1 iron chaperone -
  PWO55_RS04810 (PWO55_04820) - 936676..937386 (-) 711 WP_003155170.1 YrpD family protein -
  PWO55_RS04815 (PWO55_04825) - 937582..937851 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  PWO55_RS04820 (PWO55_04830) - 937884..938201 (-) 318 WP_003155166.1 YbjQ family protein -
  PWO55_RS04825 (PWO55_04835) - 938242..939711 (-) 1470 WP_015388467.1 sodium:solute symporter -
  PWO55_RS04830 (PWO55_04840) - 939708..939908 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  PWO55_RS04835 (PWO55_04845) - 940029..940388 (-) 360 WP_003155160.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22583.94 Da        Isoelectric Point: 8.7363

>NTDB_id=795029 PWO55_RS04795 WP_409017729.1 935049..935630(+) (comK) [Bacillus velezensis strain IMD4036]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFKRQNKTMELEVSYHSFENQVYRTAYLRTTFQDRMG
SHIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=795029 PWO55_RS04795 WP_409017729.1 935049..935630(+) (comK) [Bacillus velezensis strain IMD4036]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCAAACGGCAAAACAAAACGATGGAAC
TGGAAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGC
AGTCATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCG
GGAGCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

80.311

100

0.803