Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PWB86_RS06535 Genome accession   NZ_CP118739
Coordinates   1326053..1327423 (+) Length   456 a.a.
NCBI ID   WP_002833248.1    Uniprot ID   A0AAU7NM61
Organism   Pediococcus pentosaceus strain Ca-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321053..1332423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWB86_RS06510 (PWB86_06510) - 1321314..1322740 (-) 1427 Protein_1251 IS3 family transposase -
  PWB86_RS06515 (PWB86_06515) - 1322848..1324194 (-) 1347 WP_002833244.1 C1 family peptidase -
  PWB86_RS06520 (PWB86_06520) rpiA 1324264..1324950 (-) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  PWB86_RS06525 (PWB86_06525) - 1324954..1325283 (-) 330 WP_002833246.1 GNAT family N-acetyltransferase -
  PWB86_RS06530 (PWB86_06530) - 1325420..1325953 (+) 534 WP_002833247.1 dUTP diphosphatase -
  PWB86_RS06535 (PWB86_06535) radA 1326053..1327423 (+) 1371 WP_002833248.1 DNA repair protein RadA Machinery gene
  PWB86_RS06540 (PWB86_06540) - 1327441..1328571 (+) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  PWB86_RS06545 (PWB86_06545) gltX 1328641..1330128 (+) 1488 WP_002833250.1 glutamate--tRNA ligase -
  PWB86_RS06550 (PWB86_06550) cysS 1330309..1331721 (+) 1413 WP_115155013.1 cysteine--tRNA ligase -
  PWB86_RS06555 (PWB86_06555) - 1331714..1332127 (+) 414 WP_023440688.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50360.80 Da        Isoelectric Point: 6.7620

>NTDB_id=794849 PWB86_RS06535 WP_002833248.1 1326053..1327423(+) (radA) [Pediococcus pentosaceus strain Ca-4]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=794849 PWB86_RS06535 WP_002833248.1 1326053..1327423(+) (radA) [Pediococcus pentosaceus strain Ca-4]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTACTCGGTGGTGGAGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGTAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTTGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTGATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus mitis SK321

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651