Detailed information NTG0079483

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SKTS_RS17325
• Genome accession: NZ_AP022853
• Coordinates: 3532037..3533005 (-)
• Length: 322 a.a.
• NCBI ID: WP_173068046.1
• Uniprot ID: -
• Organism: Sulfurimicrobium lacus strain skT11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3527037..3538005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SKTS_RS17290 (SKTS_33930)	-	3528257..3528916 (+)	660	WP_173068031.1	alpha/beta fold hydrolase	-
SKTS_RS17295 (SKTS_33940)	rfaQ	3528932..3530014 (-)	1083	WP_173068034.1	putative lipopolysaccharide heptosyltransferase III	-
SKTS_RS17300 (SKTS_33950)	zapB	3530194..3530382 (+)	189	WP_244617381.1	cell division protein ZapB	-
SKTS_RS17305 (SKTS_33960)	-	3530379..3530687 (+)	309	WP_173068037.1	cell division protein ZapA	-
SKTS_RS17315 (SKTS_33970)	-	3530946..3531536 (+)	591	WP_173068040.1	5-formyltetrahydrofolate cyclo-ligase	-
SKTS_RS17320 (SKTS_33980)	-	3531563..3532018 (+)	456	WP_173068043.1	EVE domain-containing protein	-
SKTS_RS17325 (SKTS_33990)	pilA	3532037..3533005 (-)	969	WP_173068046.1	signal recognition particle-docking protein FtsY	Machinery gene
SKTS_RS17330 (SKTS_34000)	-	3533120..3534460 (+)	1341	WP_173069397.1	pitrilysin family protein	-
SKTS_RS17335 (SKTS_34010)	-	3534450..3535778 (+)	1329	WP_173068049.1	pitrilysin family protein	-
SKTS_RS17340 (SKTS_34020)	rsmD	3535765..3536310 (+)	546	WP_173068052.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
SKTS_RS17345 (SKTS_34030)	coaD	3536323..3536808 (+)	486	WP_173068055.1	pantetheine-phosphate adenylyltransferase	-
SKTS_RS17350 (SKTS_34040)	-	3536824..3537072 (+)	249	WP_173068059.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 34652.90 Da
• Isoelectric Point: 8.4355

>NTDB_id=79483 SKTS_RS17325 WP_173068046.1 3532037..3533005(-) (pilA) [Sulfurimicrobium lacus strain skT11]
MFSFFKKTEPVAEEVAQSKPESWAARLKQGLSRTREQFGRKLTNLFSGGGKIDAELYEELETILLTSDVGVTATQYLLDD
LRARVRREGLTDAAQLKGAVQQSLLALLQPLEQPLDISGHRPFIIMLAGVNGAGKTTTIGKLAKYFQSQGKSVLLAAGDT
FRAAAREQLMVWGERNNVTVIAQEGGDSAAVIFDAIHAAKARGIDVVLADTAGRLPTQLHLMEEIKKVKRVVAKADPSGP
HEVLLVLDSNTGQNGLAQVKAFDDALQLTGLVLSKLDGTAKGGIIAAIARGRPIPVRFIGVGEKVDDLRPFVAQEFVAAL
FE

Nucleotide

• Length: 969 bp

>NTDB_id=79483 SKTS_RS17325 WP_173068046.1 3532037..3533005(-) (pilA) [Sulfurimicrobium lacus strain skT11]
ATGTTTAGTTTCTTCAAGAAAACAGAACCGGTTGCCGAAGAGGTCGCGCAAAGCAAGCCTGAAAGCTGGGCGGCTCGCCT
GAAGCAGGGGCTCTCGCGTACGCGGGAACAATTCGGCAGAAAGCTGACGAACTTGTTCAGCGGCGGCGGCAAGATCGACG
CGGAGTTGTATGAAGAGCTGGAGACTATTCTCCTCACCTCCGATGTTGGCGTGACCGCAACCCAATACTTGCTCGACGAC
CTGCGCGCGCGCGTCAGGCGCGAAGGCCTGACCGATGCGGCCCAACTGAAAGGAGCGGTGCAGCAATCCCTGCTAGCTCT
GCTGCAGCCGCTGGAACAGCCGCTGGACATATCTGGCCATCGCCCGTTCATCATCATGCTGGCGGGCGTGAACGGCGCCG
GTAAAACCACCACCATCGGCAAGTTGGCCAAGTATTTCCAGTCCCAGGGTAAATCGGTGCTGCTGGCGGCTGGCGACACG
TTTCGCGCCGCTGCGCGGGAGCAGTTGATGGTGTGGGGCGAGCGCAACAATGTCACGGTGATCGCCCAGGAAGGCGGCGA
TTCCGCCGCCGTGATATTCGATGCTATCCATGCCGCCAAGGCGCGCGGCATCGACGTGGTCCTGGCGGACACCGCTGGCC
GCTTGCCGACGCAGTTGCACCTGATGGAAGAAATCAAGAAGGTCAAACGCGTTGTCGCCAAGGCCGACCCCAGCGGACCT
CACGAGGTGTTGCTGGTGCTCGACTCCAACACCGGCCAGAACGGACTGGCTCAGGTCAAGGCCTTCGACGACGCGCTGCA
GCTCACCGGCCTGGTGCTGTCGAAACTGGACGGCACGGCAAAAGGCGGCATCATCGCTGCCATTGCGCGCGGCCGACCGA
TACCCGTGCGTTTTATCGGGGTGGGTGAAAAAGTCGACGACTTGCGTCCGTTCGTGGCGCAGGAATTTGTCGCAGCCTTG
TTCGAATAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (38-104)

• SRP54-type protein, GTPase domain (SRP54) (122-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	67.774	93.478	0.634