Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PWP91_RS10395 Genome accession   NZ_CP118738
Coordinates   2081176..2082981 (-) Length   601 a.a.
NCBI ID   WP_274998497.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076176..2087981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS10380 (PWP91_10380) alaS 2076527..2079145 (-) 2619 WP_274998495.1 alanine--tRNA ligase -
  PWP91_RS10385 (PWP91_10385) - 2079410..2080336 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  PWP91_RS10390 (PWP91_10390) - 2080490..2081173 (-) 684 WP_274998496.1 O-methyltransferase -
  PWP91_RS10395 (PWP91_10395) pepF 2081176..2082981 (-) 1806 WP_274998497.1 oligoendopeptidase F Regulator
  PWP91_RS10400 (PWP91_10400) coiA 2083044..2084033 (-) 990 WP_012898311.1 competence protein CoiA Machinery gene
  PWP91_RS10405 (PWP91_10405) - 2084107..2085192 (-) 1086 WP_017864887.1 YdcF family protein -
  PWP91_RS10410 (PWP91_10410) - 2085354..2086202 (-) 849 WP_098397281.1 alpha/beta hydrolase -
  PWP91_RS10415 (PWP91_10415) - 2086394..2087815 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69919.90 Da        Isoelectric Point: 5.0100

>NTDB_id=794813 PWP91_RS10395 WP_274998497.1 2081176..2082981(-) (pepF) [Lactococcus lactis strain P-1]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAV
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=794813 PWP91_RS10395 WP_274998497.1 2081176..2082981(-) (pepF) [Lactococcus lactis strain P-1]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGTTAACTAGAATAAAAAGTGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGTG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATCCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGAGGAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.298

100

0.647