Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PWP91_RS00100 Genome accession   NZ_CP118738
Coordinates   21348..22376 (-) Length   342 a.a.
NCBI ID   WP_003132657.1    Uniprot ID   S6FVM6
Organism   Lactococcus lactis strain P-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 16348..27376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS00075 (PWP91_00075) - 16452..17651 (-) 1200 WP_226319346.1 hypothetical protein -
  PWP91_RS00080 (PWP91_00080) - 17648..18574 (-) 927 WP_226319347.1 radical SAM protein -
  PWP91_RS00085 (PWP91_00085) - 18677..19534 (-) 858 WP_274998657.1 Rgg/GadR/MutR family transcriptional regulator -
  PWP91_RS00090 (PWP91_00090) - 19645..20784 (-) 1140 WP_012898644.1 MFS transporter -
  PWP91_RS00095 (PWP91_00095) - 20781..21032 (-) 252 WP_338084802.1 SPASM domain-containing protein -
  PWP91_RS00100 (PWP91_00100) sepM 21348..22376 (-) 1029 WP_003132657.1 SepM family pheromone-processing serine protease Regulator
  PWP91_RS00105 (PWP91_00105) coaD 22363..22860 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  PWP91_RS00110 (PWP91_00110) rsmD 22908..23447 (-) 540 WP_058206540.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PWP91_RS00115 (PWP91_00115) - 23618..24838 (-) 1221 WP_003132654.1 MDR family MFS transporter -
  PWP91_RS00120 (PWP91_00120) lmrP 24920..26146 (-) 1227 WP_012898648.1 multidrug efflux MFS transporter LmrP -
  PWP91_RS00125 (PWP91_00125) - 26334..26828 (+) 495 WP_012898649.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37349.96 Da        Isoelectric Point: 9.9183

>NTDB_id=794787 PWP91_RS00100 WP_003132657.1 21348..22376(-) (sepM) [Lactococcus lactis strain P-1]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDSVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=794787 PWP91_RS00100 WP_003132657.1 21348..22376(-) (sepM) [Lactococcus lactis strain P-1]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACGAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGGAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTTCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATTCAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGCGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(227-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6FVM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491