Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PW252_RS10350 Genome accession   NZ_CP118735
Coordinates   2140852..2142219 (-) Length   455 a.a.
NCBI ID   WP_248049307.1    Uniprot ID   A0AA96VQA6
Organism   Streptococcus iners strain 29887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135852..2147219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS10340 (PW252_10340) - 2139277..2140032 (-) 756 WP_105118602.1 TIGR00266 family protein -
  PW252_RS10345 (PW252_10345) - 2140234..2140728 (-) 495 Protein_2005 beta-class carbonic anhydrase -
  PW252_RS10350 (PW252_10350) radA 2140852..2142219 (-) 1368 WP_248049307.1 DNA repair protein RadA Machinery gene
  PW252_RS10355 (PW252_10355) - 2142226..2142759 (-) 534 Protein_2007 histidine phosphatase family protein -
  PW252_RS10360 (PW252_10360) - 2142766..2143209 (-) 444 WP_002939955.1 dUTP diphosphatase -
  PW252_RS10365 (PW252_10365) - 2143229..2144215 (-) 987 WP_248049304.1 virulence RhuM family protein -
  PW252_RS10370 (PW252_10370) - 2144234..2144770 (-) 537 WP_248049302.1 hypothetical protein -
  PW252_RS10375 (PW252_10375) - 2144817..2144981 (+) 165 WP_248049300.1 hypothetical protein -
  PW252_RS10380 (PW252_10380) - 2144965..2145324 (-) 360 WP_024384177.1 YbaN family protein -
  PW252_RS10385 (PW252_10385) - 2145452..2146054 (+) 603 WP_024391582.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49885.49 Da        Isoelectric Point: 6.8573

>NTDB_id=794757 PW252_RS10350 WP_248049307.1 2140852..2142219(-) (radA) [Streptococcus iners strain 29887]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLKEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=794757 PW252_RS10350 WP_248049307.1 2140852..2142219(-) (radA) [Streptococcus iners strain 29887]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTATCACTCACCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAAAGAAGTTTCCTCCATTCAAGTGGCCCGTACCAAGACCAACATGGAGGAGTTCAAC
CGTGTCCTCGGAGGTGGCGTGGTGCCAGGCAGTCTGGTCCTGATCGGAGGCGATCCAGGAATTGGGAAATCCACCCTGCT
TTTACAGGTATCTACCCAACTTTCGACCATTGGTACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCGGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATTGCAACCTTTATCGTCG
GCCATATGACCAAGGAAGGCACCTTGGCTGGACCGCGGACCTTGGAGCATATGGTAGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTCGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCTATTCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGCGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAGCTAGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATAGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCCAAGGAAATTACTGTTGTCGGCGTGACAACCATTGGCGAAGTCCTACAAAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622