Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PW252_RS09570 Genome accession   NZ_CP118735
Coordinates   1963025..1964815 (-) Length   596 a.a.
NCBI ID   WP_172091247.1    Uniprot ID   A0AA97A3G1
Organism   Streptococcus iners strain 29887     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958025..1969815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS09545 (PW252_09550) - 1958496..1958861 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  PW252_RS09550 (PW252_09555) - 1958986..1959888 (-) 903 WP_105118296.1 ABC transporter permease -
  PW252_RS09555 (PW252_09560) opp4B 1959902..1960858 (-) 957 WP_105118297.1 oligopeptide ABC transporter permease -
  PW252_RS09560 (PW252_09565) - 1960860..1961801 (-) 942 WP_105118298.1 ATP-binding cassette domain-containing protein -
  PW252_RS09565 (PW252_09570) - 1961805..1962803 (-) 999 WP_248049885.1 ABC transporter ATP-binding protein -
  PW252_RS09570 (PW252_09575) oppA 1963025..1964815 (-) 1791 WP_172091247.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PW252_RS09575 (PW252_09580) pbp3 1965026..1966267 (+) 1242 WP_248049889.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PW252_RS09580 (PW252_09585) sufB 1966708..1968123 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  PW252_RS09585 (PW252_09590) sufU 1968518..1968958 (-) 441 WP_248049891.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65627.50 Da        Isoelectric Point: 4.4698

>NTDB_id=794753 PW252_RS09570 WP_172091247.1 1963025..1964815(-) (oppA) [Streptococcus iners strain 29887]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSTEQNLSFPSEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGNRKLDDSGLAKAEFDIENKKITVSLTGKDYKWSDGQPFTINDYIFTIKSLASKDYTGVRFDDKFLN
IVGMEEFVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEHFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDLSNLNIVGSLNSAYEYI
SFNLGKFDEAAGKNIMNENAKMNDVKLRQAIAYAIDTKTAGEKLYNGLYHPAKSLIISFFGDLHDSELAGYTYDPEKAKK
LLDEAGYKDTNGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEVNTFYDAVQANDPAID
MYAGGWSTGFDPNPNGLWGEVAPFNMSRFVSEENTKLLDAIGSVESFDEKKNLESYKAWQKYAAEQAFAIPTFESEEITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=794753 PW252_RS09570 WP_172091247.1 1963025..1964815(-) (oppA) [Streptococcus iners strain 29887]
ATGAAAAAGACAACAAAACTCTTTGCACTTGCAGGTGTAACGCTTCTCTCTGCATCTGTACTTGCTGCTTGTGGCTCTAA
ATCATCAAGCTCAACAGAACAAAACTTGTCATTCCCTTCAGAAGTGAAACAAGATGGAACTGCTGTAGCTGATGCACAGT
TGAAATACGCTTGGGTATCACCAACAACTTCTTCAGGTCTTTTGATCGATGAATTGACTGAGAATACAACAGACTCAACT
TTTGGTGGTATGGTCGATATCTCAATGTTCGGTTATGATGGAAATCGTAAATTGGACGATTCAGGTCTTGCTAAGGCTGA
ATTTGATATCGAAAACAAAAAAATCACTGTTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAGCCATTCACAA
TCAATGATTACATCTTCACAATCAAGTCATTGGCAAGCAAAGACTACACAGGTGTGCGTTTTGATGATAAATTCTTGAAC
ATCGTTGGTATGGAAGAATTTGTGGCTGGAACAGCATCTGATATTTCTGGTATCAAGAAAGTTGACGACTACACAGTAGA
ATTGACTGTGAAAGAAATGTCACCTTCTATGATGTATGCTGGTGGTGATGTACCTGCCTATATCCAGCCAGAACACATCT
ATAAAGATATTCCTGTGGCTGATTGGGAAAAGAGCGAGTACTCACGTACTGCTAAACTTGTAGGTATGGGTCCATGGAAG
ATTAAAGAAATCGTTAACGGTGAGTCTATCACTTACGTTCCAAACGAACACTTCTTCAAGGGAACAACTCCAAAAACAAG
CTCATTGAAGATCGATATCGTATCACCTGATACTATCGTTTCTGAGATGAAAGCTGGTAACTACGATATCGCAGATATGC
CGGTTGACCAATTGGACTCATACAAAGACTTGTCTAACTTGAACATCGTTGGTTCACTTAACTCAGCTTACGAATATATT
TCATTCAACCTTGGTAAATTTGATGAAGCAGCGGGCAAAAACATTATGAACGAAAACGCTAAGATGAACGATGTGAAACT
TCGTCAAGCGATTGCCTATGCAATTGATACCAAGACAGCTGGTGAGAAATTGTACAACGGTTTGTACCACCCAGCAAAAT
CATTGATTATCTCATTCTTTGGCGATCTTCATGATTCTGAATTAGCAGGTTATACATACGATCCAGAAAAAGCTAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGATACAAACGGCGACGGTATCCGTGAAGGCAAAGACGGTAAAGAATTCAAGATCAC
TTTCGCAGCTCGTAAACGTACAGAAGCTAACGAAGCCCTTGTACAACAATACATCGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTTGAATTGTACACAGGTCGTACTGTTGAAGTAAATACATTCTACGATGCAGTTCAAGCAAATGACCCTGCAATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTTCGATCCAAACCCTAACGGACTTTGGGGAGAAGTTGCTCCATTCAACATGTC
ACGTTTCGTATCTGAAGAAAACACTAAATTGTTGGATGCAATCGGCTCAGTTGAATCATTTGATGAGAAGAAAAACCTTG
AAAGCTACAAGGCATGGCAAAAATATGCTGCTGAACAAGCATTTGCTATCCCAACATTTGAATCTGAAGAAATTACAGCA
CTTAACAAACGTGTGAAGAACTACGATTCTAACTACGGTTCAGCTTCAGGCAAAGGTATTGCGCTTGAAAATATCGAATT
GACAGCTGACAAAGGTGTAGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(106-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

88.591

100

0.886