Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PW252_RS07380 Genome accession   NZ_CP118735
Coordinates   1508292..1510094 (-) Length   600 a.a.
NCBI ID   WP_248049002.1    Uniprot ID   A0AA96VID5
Organism   Streptococcus iners strain 29887     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503292..1515094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS07350 (PW252_07350) - 1503955..1504440 (-) 486 WP_248032382.1 LURP-one-related/scramblase family protein -
  PW252_RS07355 (PW252_07355) prsA 1504643..1505638 (-) 996 WP_248048992.1 peptidylprolyl isomerase PrsA -
  PW252_RS07360 (PW252_07360) - 1505701..1506420 (-) 720 WP_248048994.1 O-methyltransferase -
  PW252_RS07365 (PW252_07365) - 1506496..1507044 (-) 549 WP_248048996.1 DUF6630 family protein -
  PW252_RS07370 (PW252_07370) - 1507070..1507513 (-) 444 WP_248048998.1 hypothetical protein -
  PW252_RS07375 (PW252_07375) - 1507561..1508295 (-) 735 WP_248049000.1 hypothetical protein -
  PW252_RS07380 (PW252_07380) pepF 1508292..1510094 (-) 1803 WP_248049002.1 oligoendopeptidase F Regulator
  PW252_RS07385 (PW252_07385) - 1510217..1510846 (-) 630 WP_248049004.1 retron system putative HNH endonuclease -
  PW252_RS07390 (PW252_07390) - 1510843..1512141 (-) 1299 WP_248049006.1 AAA family ATPase -
  PW252_RS07395 (PW252_07395) - 1512206..1513183 (-) 978 WP_248049008.1 competence protein CoiA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69105.24 Da        Isoelectric Point: 4.5359

>NTDB_id=794741 PW252_RS07380 WP_248049002.1 1508292..1510094(-) (pepF) [Streptococcus iners strain 29887]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELEAIQVETDKAKVFAGHLLDSAKSLLEISETQLGLMRRLEKLYVYASMKND
QDTREGKYQEFQAKALSIYSVFSQTFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLSAKDHILSQEVEEVLAAT
SEIFEAPSETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESQNREVRQEAYEALYETYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSSTDTKVTYEEALA
TCADTLNIFGDEYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQN
QPYVYGHYSIFLAEIASTTNENLLTEKLLAEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNQLYGELNEKYYGLSAEENPLIQYEWARIPHFYYNFYVYQYSTGFAAASALADKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=794741 PW252_RS07380 WP_248049002.1 1508292..1510094(-) (pepF) [Streptococcus iners strain 29887]
ATGTCTAAACAACGCTATGAAATCGAAGAAAAATACCAGTGGGATTTGACCACAATTTTCCCAACAGATGAGGCTTGGGA
AGCTGAGTTGGAGGCTATCCAGGTAGAAACAGACAAGGCCAAGGTTTTTGCAGGTCACTTGCTGGATTCTGCTAAGAGTC
TCTTGGAGATTAGCGAAACCCAGCTTGGACTTATGCGTCGACTTGAAAAGCTCTATGTCTATGCGTCCATGAAAAATGAC
CAAGACACTCGTGAAGGGAAGTACCAGGAATTTCAAGCTAAGGCTCTAAGCATTTACTCAGTTTTTTCTCAGACTTTTGC
CTTCTATGAGCCAGAATTTATGGCCATTACCGAAGAGCAGTTGGAAGCCTTTAAAGCAGAAGAACCAGCCCTTGTTCAGT
ACAGCCACCAGTTTGAAAAACTCTTGTCAGCCAAGGACCACATCTTGTCACAAGAAGTGGAAGAAGTCCTTGCGGCGACC
AGCGAGATTTTTGAAGCACCATCTGAAACCTTCTCTGTTTTGGATAATGCCAGCCTGCGTTTCCCAGAAATCGCTGATGA
AGATGGTCACTTGGTACCACTTTCTCACGGCAACTACATCCACTTTATGGAATCACAGAACCGTGAAGTGCGTCAAGAAG
CCTACGAGGCTCTGTACGAAACCTACGAGCAGTTCCAGCATACTTACGCCAAGACCCTTCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGCAAGTACGACTCTGCCCGCCACGCAGCCCTTTCAGCCAACTTCATCCCAGAGTCCGTATA
CGATACATTAGTGTCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGCTACATCAATTTGCGTAAGAAACTCTTGGGAA
TCGATGATCTTAAGATGTACGATATGTACACACCGCTTTCTAGCACAGATACAAAAGTCACTTATGAAGAAGCCTTGGCT
ACCTGTGCGGACACCTTGAACATCTTTGGTGATGAGTACGCGGCCATTGTTAAAGAAGCCTTTGAAAACCGCTGGATTGA
TGTCCATGTCAACGAAGGCAAGCGTTCAGGAGCTTATTCAGGTGGTGCTTATGACACCAACGCCTTCATGCTCCTCAACT
GGCAGGACAATTTGGACAATATGTACACCCTCATTCACGAAACAGGGCATTCGCTTCATTCTATGTTGACTCGTCAGAAC
CAGCCTTATGTCTATGGTCACTATTCTATCTTCTTGGCGGAGATTGCTTCGACTACCAACGAAAATCTCTTGACAGAGAA
GCTCTTGGCAGAAGTAGAAGACGACAAGACCCGCTTTGCCATTCTCAACCACTACCTCGACGGCTTCCGTGGAACTGTCT
TCCGTCAAACCCAGTTTGCAGAGTTTGAGCAGGCTATTTACAAAGCAGACCAAGAAGGTCAGGTCTTGACAGCAGACTTC
CTCAACCAACTTTACGGGGAACTTAACGAGAAGTATTACGGCTTGTCTGCGGAAGAAAATCCACTGATTCAGTATGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATATTCAACTGGCTTTGCGGCAGCCTCTGCTTTGGCAG
ACAAGATTGTCAATGGTAGCCCAGAGGACAAGGAAAACTACCTCAACTACCTCAAGGCTGGTAGCTCTGATTATCCACTC
AATGTCATCGCAAAAGCTGGCGTGGATATGACCAAGGAAGACTATCTCAACGATGCCTTCAAGGTCTTTGAAGCCCGCCT
GACAGAGTTGGAAGCTCTCGTTGAGAAAGGTGTTCATAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.948

99.833

0.688