Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO934_RS17890 Genome accession   NZ_AP026082
Coordinates   3524276..3524791 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain F765     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519276..3529791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO934_RS17865 (CL8F765_34260) ygaZ 3519675..3520412 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  OO934_RS17870 (CL8F765_34270) ygaH 3520402..3520737 (+) 336 WP_000119747.1 L-valine transporter subunit YgaH -
  OO934_RS17875 (CL8F765_34280) emrR 3520828..3521358 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO934_RS17880 (CL8F765_34290) emrA 3521485..3522657 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO934_RS17885 (CL8F765_34300) emrB 3522674..3524212 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO934_RS17890 (CL8F765_34310) luxS 3524276..3524791 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  OO934_RS17895 (CL8F765_34320) gshA 3524941..3526497 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  OO934_RS17900 (CL8F765_34330) yqaA 3526570..3526998 (-) 429 WP_001287450.1 YqaA family protein -
  OO934_RS17905 (CL8F765_34340) yqaB 3526995..3527561 (-) 567 WP_000273311.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO934_RS17935 (CL8F765_34350) csrA 3528789..3528974 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=79474 OO934_RS17890 WP_001130215.1 3524276..3524791(-) (luxS) [Escherichia coli strain F765]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=79474 OO934_RS17890 WP_001130215.1 3524276..3524791(-) (luxS) [Escherichia coli strain F765]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment