Detailed information NTG0794726

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PW252_RS01955
• Genome accession: NZ_CP118735
• Coordinates: 388099..390198 (+)
• Length: 699 a.a.
• NCBI ID: WP_248050168.1
• Uniprot ID: A0AA96VLZ4
• Organism: Streptococcus iners strain 29887
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 383099..395198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PW252_RS01935 (PW252_01935)	-	383747..384835 (+)	1089	WP_248050200.1	nucleotidyltransferase	-
PW252_RS01940 (PW252_01940)	-	384914..385642 (+)	729	WP_248050183.1	MerR family transcriptional regulator	-
PW252_RS01945 (PW252_01945)	-	385701..387041 (+)	1341	WP_248050175.1	P-loop NTPase fold protein	-
PW252_RS01950 (PW252_01950)	-	387066..387476 (+)	411	WP_248050171.1	peptide deformylase	-
PW252_RS01955 (PW252_01955)	clpC	388099..390198 (+)	2100	WP_248050168.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
PW252_RS01960 (PW252_01960)	malQ	390405..391913 (+)	1509	WP_248050167.1	4-alpha-glucanotransferase	-
PW252_RS01965 (PW252_01965)	glgP	391906..394170 (+)	2265	WP_248050164.1	glycogen/starch/alpha-glucan family phosphorylase	-
PW252_RS01970 (PW252_01970)	-	394226..394933 (-)	708	WP_248050162.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77151.05 Da
• Isoelectric Point: 4.8604

>NTDB_id=794726 PW252_RS01955 WP_248050168.1 388099..390198(+) (clpC) [Streptococcus iners strain 29887]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFALYRQTGRLPQTEEVAQAQAKGQIKSDGILAKLGRN
LTKDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIALPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDTHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEEEQDIMDRIAPFFRPEFLNRFNAVIEFKHLGKADLKAIVDLMLAQVNKTLAKKGIHLEVTEAAK
EFLMEEGYDQAMGARPLRRVIENQIRDKVTDYYLDHLDVTNLLADVVENEIQISEQTFS

Nucleotide

• Length: 2100 bp

>NTDB_id=794726 PW252_RS01955 WP_248050168.1 388099..390198(+) (clpC) [Streptococcus iners strain 29887]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGATATTTTCAATCAACTCATGGGCAATATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACCCCAGAGGAATTTGCCCTTTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAGCACAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTGGCAAAACTTGGTCGCAAT
TTGACCAAAGATGCGCGTGAAGGTAAGCTGGATCCTGTTATTGGAAGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGTCGTACGAAAAATAATCCTGTTCTGGTCGGTGATGCAGGTGTTGGTAAAACAGCGGTAGTAGAAGGTTTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATTTCCATCGACATTTCAGGTTTGGAAGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATGAAGTCAAAAAAGCAGGAAATATCATTCT
ATTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGTACTGGTGGAGACTCCGGTTCCAAGGGCTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACCATTCACAAG
AACGCCGCTCTGGCCCGTCGTTTTAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGCCTTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGGTCGATGTGACTGCTGCACACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTGGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAGAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGACACTCATACAGAGCAACAGAAAG
TGGTAGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCACAAATGGGAGCTTCTGAT
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCTAATGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGACGGAAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGACATGTCT
GAATACAGCGATAGGACAGCCGTTTCCAAGCTGATTGGGACCACGGCAGGTTATGTGGGCTACGACGACAATTCCCATAC
TCTTACCGAACGTGTCCGCCGCAATCCTTACTCCATTGTCCTCTTGGATGAGATTGAAAAGGCAGACCCACAAGTGATTA
CCCTCCTCTTGCAAGTGCTAGATGACGGGCATTTGACTGATGGACAGGGCAACCAAGTTAATTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCTGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAGAGCAAGATATCATGGACCGTATTGCACC
ATTCTTCCGTCCGGAATTTCTCAACCGTTTCAACGCAGTTATCGAATTCAAACACTTGGGCAAAGCAGACCTCAAGGCAA
TTGTAGATTTGATGTTAGCCCAGGTCAATAAGACCCTAGCTAAAAAAGGTATTCACTTAGAAGTGACTGAGGCAGCCAAA
GAGTTCTTGATGGAAGAAGGCTATGATCAGGCTATGGGAGCTCGTCCATTGCGCCGTGTGATTGAAAATCAGATTCGAGA
CAAGGTAACGGATTACTATCTGGATCACCTAGATGTGACAAACTTGTTGGCTGATGTAGTAGAAAATGAGATTCAAATCA
GCGAGCAAACCTTTTCATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (257-351)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.727	100	0.481
clpE	Streptococcus pneumoniae TIGR4	46.88	98.569	0.462
clpE	Streptococcus pneumoniae R6	46.87	98.283	0.461
clpE	Streptococcus pneumoniae D39	46.87	98.283	0.461
clpE	Streptococcus pneumoniae Rx1	46.87	98.283	0.461
clpE	Streptococcus mutans UA159	49.921	90.844	0.454
clpC	Bacillus subtilis subsp. subtilis str. 168	46.474	89.27	0.415
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.857	93.991	0.393
clpC	Streptococcus pneumoniae Rx1	42.154	92.99	0.392
clpC	Streptococcus pneumoniae D39	42.154	92.99	0.392
clpC	Streptococcus pneumoniae TIGR4	42	92.99	0.391
clpC	Streptococcus mutans UA159	44.013	88.412	0.389
clpC	Streptococcus thermophilus LMG 18311	43.408	88.984	0.386
clpC	Streptococcus thermophilus LMD-9	42.88	89.413	0.383