Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PW252_RS01125 Genome accession   NZ_CP118735
Coordinates   202637..203350 (+) Length   237 a.a.
NCBI ID   WP_248049670.1    Uniprot ID   A0AA96VKR1
Organism   Streptococcus iners strain 29887     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 197637..208350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS01115 (PW252_01115) treC 198536..200161 (-) 1626 WP_248049667.1 alpha,alpha-phosphotrehalase -
  PW252_RS01120 (PW252_01120) treP 200237..202228 (-) 1992 WP_248049669.1 PTS system trehalose-specific EIIBC component -
  PW252_RS01125 (PW252_01125) treR 202637..203350 (+) 714 WP_248049670.1 trehalose operon repressor Regulator
  PW252_RS01130 (PW252_01130) - 203406..203717 (+) 312 WP_248049671.1 hypothetical protein -
  PW252_RS01135 (PW252_01135) - 203714..204262 (+) 549 WP_105124490.1 CvpA family protein -
  PW252_RS01140 (PW252_01140) - 204298..206631 (+) 2334 WP_248049672.1 endonuclease MutS2 -
  PW252_RS01145 (PW252_01145) - 206655..207358 (+) 704 Protein_193 GNAT family N-acetyltransferase -
  PW252_RS01150 (PW252_01150) trxA 207730..208044 (+) 315 WP_172028300.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27273.09 Da        Isoelectric Point: 5.8197

>NTDB_id=794724 PW252_RS01125 WP_248049670.1 202637..203350(+) (treR) [Streptococcus iners strain 29887]
MKKYQEIYHDLKEKIRTNLYPAETSLPTEQQLQEIYGVSRDTVRKALAMLTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNSLQLSSQTQVVSLEQVTVNSSLASLTGFEPYSKVWKVVRTRSIDGKISVVDTDYLAVELVPELTLEIAERSIY
EYLEGQLGLDIAYAQKEITVEPTSREERDLMQCQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=794724 PW252_RS01125 WP_248049670.1 202637..203350(+) (treR) [Streptococcus iners strain 29887]
ATGAAAAAATACCAAGAAATTTATCATGATTTAAAGGAAAAAATCCGTACAAATCTTTATCCGGCGGAAACGTCCTTACC
GACCGAACAACAATTGCAGGAAATCTATGGGGTTAGTCGGGACACGGTACGAAAGGCTTTGGCTATGTTGACAGAAGGGG
GGCTTATCCAAAAGGTTCAGGGACGTGGTTCCATGGTCTTGAAGCAAGAAATCTTGAATTTTCCTGTTTCTGGCTTGACC
TCCTATCAGGAATTGACCAACTCTCTTCAATTGTCTAGTCAGACACAGGTTGTCAGTCTAGAACAGGTGACGGTCAACAG
CAGTTTGGCTAGTTTGACAGGTTTTGAACCCTATAGCAAGGTCTGGAAAGTTGTCCGTACACGTTCTATTGATGGGAAGA
TTTCTGTCGTGGACACAGACTATCTGGCAGTGGAGCTGGTTCCTGAGTTGACTCTTGAGATTGCGGAGAGGTCCATCTAT
GAATACCTGGAAGGCCAGTTGGGCTTGGATATCGCCTATGCGCAAAAGGAAATTACGGTGGAGCCTACTAGCCGGGAAGA
ACGTGATTTGATGCAGTGTCAGGATGATTACTTGGTTCTCATCAAGTCCCGGGTCTATCTGGGGGATACAAGACAGTTCC
AATATACAGAAAGCAAGCATAAGATTGATAAATTCCGATTTGTAGATTTTGCACGCAGAAAACATTCTTTGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515