Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PW220_RS09545 Genome accession   NZ_CP118734
Coordinates   1903814..1905181 (-) Length   455 a.a.
NCBI ID   WP_024398839.1    Uniprot ID   A0A7T1LCA5
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898814..1910181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS09520 (PW220_09525) - 1899638..1900918 (-) 1281 WP_248055694.1 MFS transporter -
  PW220_RS09525 (PW220_09530) - 1901005..1901652 (-) 648 WP_248055695.1 hypothetical protein -
  PW220_RS09530 (PW220_09535) - 1901657..1902103 (-) 447 WP_105118601.1 LytTR family DNA-binding domain-containing protein -
  PW220_RS09535 (PW220_09540) - 1902240..1902995 (-) 756 WP_172018867.1 TIGR00266 family protein -
  PW220_RS09540 (PW220_09545) - 1903196..1903690 (-) 495 WP_248055698.1 beta-class carbonic anhydrase -
  PW220_RS09545 (PW220_09550) radA 1903814..1905181 (-) 1368 WP_024398839.1 DNA repair protein RadA Machinery gene
  PW220_RS09550 (PW220_09555) - 1905188..1905631 (-) 444 WP_105210133.1 dUTP diphosphatase -
  PW220_RS09555 (PW220_09560) - 1905659..1906183 (-) 525 WP_248055699.1 hypothetical protein -
  PW220_RS09560 (PW220_09565) - 1906233..1907495 (-) 1263 WP_248055702.1 S41 family peptidase -
  PW220_RS09565 (PW220_09570) - 1907602..1909386 (-) 1785 WP_248055703.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49857.35 Da        Isoelectric Point: 6.1911

>NTDB_id=794705 PW220_RS09545 WP_024398839.1 1903814..1905181(-) (radA) [Streptococcus iners subsp. hyiners strain 29892]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=794705 PW220_RS09545 WP_024398839.1 1903814..1905181(-) (radA) [Streptococcus iners subsp. hyiners strain 29892]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACCCGCCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAACATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGGAAGTCCACCCTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGTGAGGAGTCTGCACAGCAGATTAAGC
TTCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTAATTATCGACTCTATCCAAACCATCATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCTAGGACCCTGGAGCACATGGTGGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTCGGCTCTACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTACAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACTACGACAGGCTTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATAGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCAAAGGAAATCACTGTTGTCGGCGTGACAACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1LCA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622