Detailed information NTG0794701

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PW220_RS08365
• Genome accession: NZ_CP118734
• Coordinates: 1673300..1675399 (-)
• Length: 699 a.a.
• NCBI ID: WP_248053974.1
• Uniprot ID: -
• Organism: Streptococcus iners subsp. hyiners strain 29892
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1668300..1680399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PW220_RS08350 (PW220_08355)	-	1668569..1669276 (+)	708	WP_172091893.1	UTRA domain-containing protein	-
PW220_RS08355 (PW220_08360)	glgP	1669332..1671596 (-)	2265	WP_248053976.1	glycogen/starch/alpha-glucan family phosphorylase	-
PW220_RS08360 (PW220_08365)	malQ	1671589..1673097 (-)	1509	WP_248053975.1	4-alpha-glucanotransferase	-
PW220_RS08365 (PW220_08370)	clpC	1673300..1675399 (-)	2100	WP_248053974.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
PW220_RS08370 (PW220_08375)	-	1675916..1676326 (-)	411	WP_248053973.1	peptide deformylase	-
PW220_RS08375 (PW220_08380)	-	1676398..1677126 (-)	729	WP_248053972.1	MerR family transcriptional regulator	-
PW220_RS08380 (PW220_08385)	-	1677195..1677893 (-)	699	WP_248053971.1	ion transporter	-
PW220_RS08385 (PW220_08390)	-	1677895..1678983 (-)	1089	WP_248053970.1	nucleotidyltransferase	-
PW220_RS08390 (PW220_08395)	-	1678980..1679726 (-)	747	WP_105118575.1	class I SAM-dependent DNA methyltransferase	-
PW220_RS08395 (PW220_08400)	rsfS	1679875..1680234 (-)	360	WP_044781673.1	ribosome silencing factor	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77257.20 Da
• Isoelectric Point: 4.8309

>NTDB_id=794701 PW220_RS08365 WP_248053974.1 1673300..1675399(-) (clpC) [Streptococcus iners subsp. hyiners strain 29892]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQAQTKGQIKSDGILAKLGCN
LTQDAREGKLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDTHTEQQKVVATVNDVAQSVERMTGIPVSQMGASD
IERLKELKNRLSAKVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADRQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEEELDIMDRIAPFFRPEFLNRFNAVIEFKHLDKENLKAIVDLMLAQVNQTLAKKGITLEVTEAAK
EFLMEAGYDKAMGARPLRRVIESQIRDKVTDFYLDHTNVTNLLADVADNEIKIEEQTFS

Nucleotide

• Length: 2100 bp

>NTDB_id=794701 PW220_RS08365 WP_248053974.1 1673300..1675399(-) (clpC) [Streptococcus iners subsp. hyiners strain 29892]
ATGAACAACAATTTCAATAATTTTAACAATATGGACGATATTTTCAATCAACTCATGGGCAATATGGGAGGTTACAGCAC
AGAGCGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTCGCTATGTACCGTCAGACTGGTCGTCTGC
CACAGACAGAAGAAGTGGCTCAAGCACAGACTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTAGGTTGCAAT
TTGACCCAAGATGCGCGTGAAGGGAAGTTGGATCCAGTCATTGGACGCAACAAGGAAATCCAAGAAACAGCAGAAATTTT
GGCGCGCCGTACCAAGAACAATCCAGTTTTGGTCGGTGATGCAGGTGTTGGGAAAACTGCGGTAGTAGAAGGCTTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAAGCT
GGGACTCAGTATCGTGGGGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTTAAAAAAGCTGGCAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGTACTGGTGGAGACTCCGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACGCAGGACGAATACCGCAATACCATTCACAAG
AACGCCGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTTAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCAGTTGATTATTCCGTCC
AATATATTCCGCAACGTAGCTTGCCTGATAAGGCTATTGACCTGATTGATGTGACCGCTGCTCACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTGGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATACTCATACAGAGCAACAGAAAG
TAGTAGCGACCGTCAATGATGTGGCTCAGTCAGTTGAGCGTATGACAGGAATTCCAGTCTCTCAAATGGGAGCCTCTGAC
ATTGAACGGCTCAAGGAATTGAAAAATCGCCTGTCAGCCAAGGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGACGGCAACCGTCCGATTGGTTCCTTCCTATTTGTCGGTCCGACAGGTG
TCGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATCCGCCTGGATATGTCT
GAATACAGTGATCGGACAGCCGTTTCCAAATTAATCGGGACCACAGCGGGTTATGTGGGCTACGATGACAATTCCCATAC
TCTTACAGAGCGTGTCCGCCGCAATCCGTACTCCATTGTCCTCTTGGATGAGATTGAAAAAGCAGATCGACAAGTGATTA
CACTTCTCTTGCAAGTGCTGGATGACGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATC
ATCGCTACATCAAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAGGAAGAGCTAGATATCATGGACCGCATTGCTCC
ATTCTTCCGTCCGGAATTCCTCAACCGTTTCAACGCAGTTATAGAATTTAAACATCTGGACAAGGAAAATCTAAAAGCAA
TTGTTGACTTGATGTTAGCACAGGTTAATCAAACCCTAGCTAAAAAAGGGATTACCCTTGAAGTGACGGAAGCTGCCAAA
GAATTCTTGATGGAAGCCGGCTATGACAAGGCAATGGGGGCTCGCCCACTCCGTCGGGTCATCGAAAGCCAAATTCGTGA
TAAGGTGACAGACTTCTATTTGGACCATACAAATGTGACCAACTTACTCGCGGATGTGGCTGACAATGAAATCAAAATTG
AAGAGCAAACCTTTTCATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (257-351)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-677)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.085	100	0.485
clpE	Streptococcus pneumoniae Rx1	46.734	98.569	0.461
clpE	Streptococcus pneumoniae D39	46.734	98.569	0.461
clpE	Streptococcus pneumoniae R6	46.734	98.569	0.461
clpE	Streptococcus pneumoniae TIGR4	46.734	98.569	0.461
clpE	Streptococcus mutans UA159	50.079	90.844	0.455
clpC	Bacillus subtilis subsp. subtilis str. 168	45.131	92.561	0.418
clpC	Streptococcus thermophilus LMD-9	43.73	88.984	0.389
clpC	Streptococcus pneumoniae Rx1	41.846	92.99	0.389
clpC	Streptococcus pneumoniae D39	41.846	92.99	0.389
clpC	Streptococcus mutans UA159	43.851	88.412	0.388
clpC	Streptococcus pneumoniae TIGR4	41.692	92.99	0.388
clpC	Streptococcus thermophilus LMG 18311	43.408	88.984	0.386
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.995	88.841	0.382