Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PW220_RS01690 Genome accession   NZ_CP118734
Coordinates   314650..315384 (+) Length   244 a.a.
NCBI ID   WP_248054938.1    Uniprot ID   -
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 309650..320384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS01660 (PW220_01660) - 309873..311537 (+) 1665 WP_248054943.1 DAK2 domain-containing protein -
  PW220_RS01665 (PW220_01665) tsaE 311638..312078 (+) 441 WP_316716441.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  PW220_RS01670 (PW220_01670) - 312071..312595 (+) 525 WP_248054941.1 GNAT family N-acetyltransferase -
  PW220_RS01675 (PW220_01675) - 312595..313836 (+) 1242 WP_248054940.1 LCP family protein -
  PW220_RS01680 (PW220_01680) - 313874..314173 (-) 300 WP_105118292.1 chemotaxis protein -
  PW220_RS01685 (PW220_01685) - 314175..314588 (-) 414 WP_248054939.1 HIT family protein -
  PW220_RS01690 (PW220_01690) pptA 314650..315384 (+) 735 WP_248054938.1 ABC transporter ATP-binding protein Regulator
  PW220_RS01695 (PW220_01695) - 315381..316418 (+) 1038 WP_248054937.1 ABC transporter permease -
  PW220_RS01700 (PW220_01700) ccrZ 316472..317266 (+) 795 WP_248054936.1 cell cycle regulator CcrZ -
  PW220_RS01705 (PW220_01705) trmB 317263..317898 (+) 636 WP_248054935.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PW220_RS01710 (PW220_01710) rimP 318113..318583 (+) 471 WP_248054934.1 ribosome maturation factor RimP -
  PW220_RS01715 (PW220_01715) nusA 318623..319765 (+) 1143 WP_248054933.1 transcription termination factor NusA -
  PW220_RS01720 (PW220_01720) rnpM 319782..320078 (+) 297 WP_172022661.1 RNase P modulator RnpM -
  PW220_RS01725 (PW220_01725) - 320035..320373 (+) 339 WP_172053996.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26807.25 Da        Isoelectric Point: 4.4004

>NTDB_id=794675 PW220_RS01690 WP_248054938.1 314650..315384(+) (pptA) [Streptococcus iners subsp. hyiners strain 29892]
MLEVKNVTGGYVNIPVLKDVSFSVKDGELVGLIGLNGAGKSTTIKEIIGLLTPYQGQILIDGQGLAQAPEIYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLPWEAAWEIAERLLKIFRLNEKLDWYPVNFSKGMKQKVMIICAFLVEPSLLIVDEPF
LGLDPVAIADLIALLEEEKVKGTSILMSTHVLDSAEKMCDSFVILHQGQVRAIGNLADLQSQFGMEGSSLNDIYLALTQE
GAVG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=794675 PW220_RS01690 WP_248054938.1 314650..315384(+) (pptA) [Streptococcus iners subsp. hyiners strain 29892]
ATGTTAGAAGTTAAAAATGTAACAGGGGGCTATGTCAATATCCCTGTCTTGAAAGATGTGTCTTTTTCTGTTAAAGACGG
AGAACTCGTCGGCTTAATTGGTCTAAATGGTGCGGGGAAATCAACGACTATCAAGGAAATCATCGGCCTCTTGACGCCTT
ATCAGGGGCAAATTTTGATCGATGGCCAAGGGCTAGCTCAGGCTCCTGAAATTTATCGGAAGAAGATTGGTTTTATCCCT
GAGACACCTAGTTTATACGAGGAGTTGACGCTAAAAGAGCACTTGGAAGTGGTGGCAATGGCTTACGATTTGCCATGGGA
AGCTGCTTGGGAGATAGCAGAGAGATTGCTGAAAATCTTTCGTTTGAATGAGAAATTAGATTGGTATCCGGTTAATTTCT
CTAAGGGCATGAAACAAAAGGTCATGATTATCTGTGCCTTCCTGGTAGAGCCAAGTTTGCTAATCGTTGATGAGCCATTT
TTGGGTTTGGACCCAGTTGCCATTGCAGATTTGATTGCTCTCTTGGAAGAGGAAAAGGTAAAGGGGACTTCTATCCTCAT
GTCCACTCACGTTTTGGACTCGGCTGAAAAGATGTGTGATTCCTTTGTGATTTTGCATCAAGGACAGGTGAGGGCAATTG
GAAACTTAGCAGATTTGCAGTCCCAATTTGGTATGGAAGGGTCTAGTTTAAATGATATTTATCTGGCCTTGACCCAAGAA
GGAGCGGTCGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.967

97.951

0.705
  pptA Streptococcus thermophilus LMD-9

71.13

97.951

0.697