Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PW220_RS01630 Genome accession   NZ_CP118734
Coordinates   303550..305340 (+) Length   596 a.a.
NCBI ID   WP_248054946.1    Uniprot ID   A0AA96VGJ2
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 298550..310340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS01615 (PW220_01615) sufU 299682..300122 (+) 441 WP_248054949.1 Fe-S cluster assembly sulfur transfer protein SufU -
  PW220_RS01620 (PW220_01620) sufB 300257..301672 (+) 1416 WP_248054948.1 Fe-S cluster assembly protein SufB -
  PW220_RS01625 (PW220_01625) pbp3 302097..303338 (-) 1242 WP_248054947.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PW220_RS01630 (PW220_01630) oppA 303550..305340 (+) 1791 WP_248054946.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PW220_RS01635 (PW220_01635) - 305564..306562 (+) 999 WP_248054945.1 ABC transporter ATP-binding protein -
  PW220_RS01640 (PW220_01640) - 306566..307507 (+) 942 WP_105118298.1 ATP-binding cassette domain-containing protein -
  PW220_RS01645 (PW220_01645) opp4B 307509..308465 (+) 957 WP_105118297.1 oligopeptide ABC transporter permease -
  PW220_RS01650 (PW220_01650) - 308479..309381 (+) 903 WP_248054944.1 ABC transporter permease -
  PW220_RS01655 (PW220_01655) - 309505..309870 (+) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65795.56 Da        Isoelectric Point: 4.4301

>NTDB_id=794674 PW220_RS01630 WP_248054946.1 303550..305340(+) (oppA) [Streptococcus iners subsp. hyiners strain 29892]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSTEQNLSFPSEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGNRKLDDSGLAKAEFDIENKKITVSLTGKDYKWSDGQPFTINDYIFTIKSLASKDYTGVRFDDKFLN
IVGMEEFVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEHFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDLSNLNIVGSLNSSYEYI
SFNFGKYDEAAEKNVMNENAKMNDVKLRQAIAYAIDTKTAGEKLYNGLYHPANSLIISFFGELHDSELAGYTYDPEKAKK
LLDEAGYKDTNGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEVNTFYDAIQANDPAID
MYAGGWSTGYDPNPNGLWGELAPFNMSRFVSEENTKLLDAIGSVESFDEKKNLESYKAWQKYAAEQAFAIPTFESEEITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=794674 PW220_RS01630 WP_248054946.1 303550..305340(+) (oppA) [Streptococcus iners subsp. hyiners strain 29892]
ATGAAAAAGACAACAAAACTCTTTGCACTTGCAGGTGTAACTCTTCTTTCTGCATCTGTACTTGCTGCTTGTGGTTCTAA
ATCATCAAGCTCAACAGAACAAAACTTGTCATTCCCGTCAGAAGTGAAACAAGACGGAACTGCTGTGGCTGATGCACAGT
TGAAATACGCTTGGGTGTCGCCGACAACTTCATCAGGTCTTTTGATTGATGAATTGACTGAGAATACAACAGACTCAACT
TTTGGTGGAATGGTCGATATCTCAATGTTCGGTTATGATGGAAATCGTAAATTGGACGATTCAGGTCTTGCTAAGGCTGA
ATTTGATATCGAAAACAAAAAAATCACTGTTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAGCCATTCACAA
TCAATGATTACATCTTCACAATCAAGTCATTGGCAAGCAAAGACTACACAGGTGTGCGTTTTGATGATAAATTCTTGAAC
ATCGTGGGTATGGAAGAATTTGTGGCTGGAACAGCATCAGATATTTCTGGTATCAAGAAAGTTGACGACTACACAGTAGA
ATTGACAGTGAAAGAAATGTCACCTTCTATGATGTATGCTGGCGGTGATGTACCTGCCTATATCCAACCAGAACACATCT
ACAAAGATATTCCTGTGGCTGATTGGGAAAAGAGCGAGTACTCACGTACTGCTAAACTTGTAGGTATGGGTCCATGGAAG
ATTAAAGAAATTGTTAACGGTGAGTCTATCACTTACGTTCCAAACGAACACTTCTTCAAGGGAACAACTCCAAAAACAAG
CTCATTGAAGATTGATATCGTTTCACCTGATACAATCGTTTCTGAGATGAAGGCTGGTAACTACGATATCGCTGATATGC
CAGTTGACCAATTGGATTCATACAAAGACTTGTCTAACTTGAACATCGTTGGTTCACTTAACTCATCTTACGAATACATC
TCATTTAACTTTGGTAAATATGACGAGGCTGCTGAGAAGAACGTCATGAATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCAATTGATACCAAGACTGCTGGTGAGAAATTGTATAACGGCTTGTACCACCCAGCAAACT
CATTGATTATCTCATTCTTTGGCGAACTTCATGATTCTGAATTGGCAGGCTATACATACGATCCAGAAAAAGCTAAGAAA
CTCTTGGATGAAGCTGGCTACAAGGATACAAACGGTGACGGCATTCGTGAAGGTAAAGACGGTAAAGAATTCAAAATCAC
TTTCGCAGCTCGTAAACGTACAGAAGCGAACGAAGCACTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTTGAATTGTACACTGGCCGTACTGTTGAAGTAAATACTTTCTACGATGCAATTCAAGCAAATGACCCTGCAATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCTAACGGACTTTGGGGAGAACTTGCTCCATTCAACATGTC
ACGTTTCGTATCTGAAGAAAACACTAAATTGTTGGATGCAATCGGCTCAGTAGAATCATTTGATGAGAAGAAAAACCTTG
AAAGCTACAAGGCATGGCAAAAGTATGCTGCTGAACAAGCATTTGCTATCCCAACATTTGAATCTGAAGAAATTACAGCA
CTTAACAAACGTGTGAAGAACTACGATTCTAACTACGGTTCAGCTTCAGGCAAAGGTATTGCGCTTGAAAATATCGAATT
GACAGCTGACAAAGGTGTAGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(106-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

88.758

100

0.888