Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PXH68_RS08790 Genome accession   NZ_CP118733
Coordinates   1928825..1930192 (-) Length   455 a.a.
NCBI ID   WP_248027101.1    Uniprot ID   A0AA96VE66
Organism   Streptococcus suivaginalis strain 29896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923825..1935192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS08765 (PXH68_08755) - 1924716..1925996 (-) 1281 WP_248027065.1 MFS transporter -
  PXH68_RS08770 (PXH68_08760) - 1926083..1926742 (-) 660 WP_248027063.1 LiaF transmembrane domain-containing protein -
  PXH68_RS08775 (PXH68_08765) - 1926747..1927193 (-) 447 WP_248027061.1 LytTR family DNA-binding domain-containing protein -
  PXH68_RS08780 (PXH68_08770) - 1927330..1928085 (-) 756 WP_125265875.1 TIGR00266 family protein -
  PXH68_RS08785 (PXH68_08775) - 1928207..1928701 (-) 495 WP_248027059.1 beta-class carbonic anhydrase -
  PXH68_RS08790 (PXH68_08780) radA 1928825..1930192 (-) 1368 WP_248027101.1 DNA repair protein RadA Machinery gene
  PXH68_RS08795 (PXH68_08785) - 1930199..1930642 (-) 444 WP_248027056.1 dUTP diphosphatase -
  PXH68_RS08800 (PXH68_08790) - 1930671..1931195 (-) 525 WP_248027054.1 hypothetical protein -
  PXH68_RS08805 (PXH68_08795) - 1931389..1931748 (-) 360 WP_029175487.1 YbaN family protein -
  PXH68_RS08810 (PXH68_08800) - 1931876..1932478 (+) 603 WP_015647489.1 NADPH-dependent FMN reductase -
  PXH68_RS08815 (PXH68_08805) - 1932493..1933728 (+) 1236 WP_105242242.1 NAD(P)H-dependent oxidoreductase -
  PXH68_RS08820 (PXH68_08810) - 1933959..1934753 (+) 795 WP_248027052.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49873.35 Da        Isoelectric Point: 6.1911

>NTDB_id=794651 PXH68_RS08790 WP_248027101.1 1928825..1930192(-) (radA) [Streptococcus suivaginalis strain 29896]
MTIAKKKTTFICQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=794651 PXH68_RS08790 WP_248027101.1 1928825..1930192(-) (radA) [Streptococcus suivaginalis strain 29896]
ATCACCATCGCTAAGAAAAAAACAACCTTTATCTGTCAATCCTGCGAGTATCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCTATGAAACTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAAGAGTTCAAC
CGTGTCCTGGGTGGCGGCGTGGTGCCGGGCAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCCTGCT
CCTGCAAGTATCAACCCAACTTTCGACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCTTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAGAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGTTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCAGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCTACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTTTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTTTATGCCCCCAAAAA
TTCTCTGACAGGTATCAAGGTCCCCAAGGAAATCACCGTTATCGGCGTGACTACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.56

0.626