Detailed information NTG0794650

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PXH68_RS08430
• Genome accession: NZ_CP118733
• Coordinates: 1852619..1855075 (-)
• Length: 818 a.a.
• NCBI ID: WP_248028225.1
• Uniprot ID: A0AA97A013
• Organism: Streptococcus suivaginalis strain 29896
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1847619..1860075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PXH68_RS08405 (PXH68_08395)	hslO	1847960..1848826 (+)	867	WP_248028228.1	Hsp33 family molecular chaperone HslO	-
PXH68_RS08410 (PXH68_08400)	dusB	1848819..1849823 (+)	1005	WP_248028264.1	tRNA dihydrouridine synthase DusB	-
PXH68_RS08415 (PXH68_08405)	-	1849862..1850635 (-)	774	WP_248028227.1	NUDIX domain-containing protein	-
PXH68_RS08420 (PXH68_08410)	pnuC	1850637..1851443 (-)	807	WP_398582962.1	nicotinamide riboside transporter PnuC	-
PXH68_RS08425 (PXH68_08415)	-	1851453..1852490 (-)	1038	WP_158456482.1	AAA family ATPase	-
PXH68_RS08430 (PXH68_08420)	clpC	1852619..1855075 (-)	2457	WP_248028225.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
PXH68_RS08435 (PXH68_08425)	-	1855076..1855534 (-)	459	WP_248028224.1	CtsR family transcriptional regulator	-
PXH68_RS08440 (PXH68_08430)	traF	1855818..1856156 (+)	339	WP_248028223.1	conjugal transfer protein TraF	-
PXH68_RS08445 (PXH68_08435)	-	1856156..1856857 (+)	702	WP_248028222.1	GNAT family acetyltransferase	-
PXH68_RS08450 (PXH68_08440)	tsf	1857222..1858262 (-)	1041	WP_248028221.1	translation elongation factor Ts	-
PXH68_RS08455 (PXH68_08445)	rpsB	1858503..1859279 (-)	777	WP_172044535.1	30S ribosomal protein S2	-

Sequence

Protein

• Length: 818 a.a.
• Molecular weight: 90518.98 Da
• Isoelectric Point: 5.8952

>NTDB_id=794650 PXH68_RS08430 WP_248028225.1 1852619..1855075(-) (clpC) [Streptococcus suivaginalis strain 29896]
MGKKISKGLQGVFEDAQLIAQRYRSEYLETWHLLLAFVINPDTIAGSVLAEYPASISDYEQATFVVTEKVYQEELERFDF
LPSSSRMVEVNILAEKIAEIVKAKELGTEHLFMAILLDKRSIASQILDRVGFHFEDSGDKTRFIDLRKNLEGKAGFTKDH
LKAIRSILKGGKPKQANVGNMMGMPQPQSGGLEDYTRDLTLLARSGQLEPVIGRDEEIARMVQILSRKTKNNPVLVGDAG
VGKTALALGLAQRIANGQVPASLVNMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGI
DSTLDAANILKPALSRGTLRTVGATTQDEYQKHIEKDAALVRRFAKVLIEEPSVEDSIKILEGLKSSYEAHHKVSISDQA
LATAVRYAKRYLTSKNLPDSAIDLLDEASAKVQNRAKGQAPEGDLTALDQALMAGKYKKVSQLMVKAQVAQEEGNQYQLE
VTEEDILSTLSVLSGIPVSKLSRSDAKKYLHLEEELHKRVIGQDEAISAISRAIRRNQSGIRTGRRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVL
LQVLDDGVLTDSKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVV
FHSLTESDMLDVVKVMVKPLIAVAASKGILLKLQPSALKLLAKEGYDPEMGARPLRRLLQTKLEDPMAEMLLREDVGAGM
TLKVGVKANQLKFESVNE

Nucleotide

• Length: 2457 bp

>NTDB_id=794650 PXH68_RS08430 WP_248028225.1 1852619..1855075(-) (clpC) [Streptococcus suivaginalis strain 29896]
ATGGGAAAAAAGATTTCAAAAGGTTTACAAGGAGTATTTGAAGATGCTCAGTTGATTGCCCAACGTTACCGGAGCGAGTA
TTTGGAGACTTGGCACTTATTGCTGGCTTTTGTGATCAATCCAGACACGATTGCAGGCTCTGTTTTGGCAGAATATCCTG
CTTCTATCTCTGATTATGAGCAAGCCACTTTTGTGGTGACAGAAAAAGTCTATCAAGAAGAGTTGGAGAGGTTTGATTTT
CTGCCGTCTTCCAGCCGCATGGTCGAGGTCAATATTCTAGCGGAAAAAATTGCAGAGATTGTCAAGGCTAAGGAACTAGG
GACAGAGCATCTGTTTATGGCCATTCTCTTGGACAAGCGCTCGATTGCATCGCAAATATTGGACAGGGTTGGTTTTCATT
TTGAAGATAGTGGTGATAAGACCCGCTTTATTGATTTGCGGAAAAATTTGGAAGGTAAGGCAGGTTTTACCAAGGACCAC
CTCAAAGCCATCCGGAGTATCTTGAAGGGCGGAAAACCCAAGCAAGCCAATGTAGGAAACATGATGGGTATGCCTCAGCC
ACAAAGTGGAGGTCTGGAAGATTATACACGGGATTTGACGCTCTTGGCTCGTTCTGGTCAATTGGAACCTGTGATTGGTC
GAGATGAGGAAATTGCTCGTATGGTCCAGATTCTCTCACGAAAAACCAAGAACAATCCAGTCTTGGTTGGGGATGCGGGT
GTCGGAAAAACTGCGCTAGCTTTGGGCTTGGCCCAGCGAATCGCTAATGGTCAAGTGCCAGCCAGCCTTGTCAATATGCG
GGTTCTTGAGCTGGATTTGATGAATGTGATTGCTGGAACACGTTTTCGTGGAGATTTTGAGGAACGGATGAACAATATCA
TCAATGATATCGAAGAAGATGGTCAGGTGATTTTGTTTATCGATGAGCTGCACACGATTATGGGGTCTGGTTCAGGGATT
GATTCGACTTTGGATGCGGCCAATATCCTTAAGCCTGCCCTGTCTCGTGGAACCTTGCGGACAGTAGGGGCAACGACTCA
GGATGAGTACCAAAAGCATATTGAAAAAGATGCGGCCTTGGTGCGTCGTTTTGCAAAGGTTTTGATTGAAGAGCCGAGTG
TGGAAGATAGTATCAAGATTTTAGAGGGGTTGAAATCCTCCTATGAAGCTCATCACAAGGTTTCGATTTCAGATCAGGCT
TTGGCAACAGCGGTGCGGTATGCCAAGAGGTATTTGACCAGTAAGAACCTGCCAGATTCGGCCATTGACTTGTTAGATGA
AGCCTCTGCCAAGGTGCAAAATCGTGCCAAGGGTCAAGCGCCAGAAGGTGATCTGACTGCCTTGGATCAGGCGCTGATGG
CTGGAAAATATAAGAAGGTCAGCCAACTGATGGTCAAGGCGCAGGTTGCTCAGGAGGAGGGCAACCAGTATCAGCTAGAA
GTGACGGAAGAAGATATTTTATCTACTCTGAGTGTCCTATCAGGGATCCCTGTGTCTAAATTGAGTCGTTCGGACGCCAA
GAAATACCTCCATCTGGAAGAGGAGTTGCACAAGCGTGTGATTGGACAGGATGAGGCGATTTCTGCCATCAGTCGTGCCA
TTCGCCGTAATCAGTCAGGTATTCGGACAGGACGCAGACCGATTGGCTCCTTCATGTTCTTAGGGCCAACTGGTGTCGGT
AAGACAGAGTTGGCCAAGGCTTTGGCAGAAGTTCTCTTTGATGATGAATCGGCTCTTATTCGTTTTGACATGAGTGAGTA
CATGGAGAAATTTGCGGCTAGTCGCCTAAATGGAGCGCCTCCTGGTTATGTTGGCTATGAAGAAGGTGGCGAGCTGACAG
AGAAAGTTCGTAATAAACCCTATTCTGTTCTGCTCTTTGATGAGGTAGAAAAAGCCCATCCAGATATTTTTAACGTGCTT
TTGCAGGTCTTGGATGATGGTGTCTTGACCGATAGCAAGGGTCGCAAGGTTGATTTCTCCAACACGGTGATTATTATGAC
TTCTAACTTAGGAGCAACCGCTCTTCGTGATGATAAGACCGTTGGGTTTGGAGCTCTTGATTTGTCCAAGGACCACAAGG
AAGTTGAAAAACGGATCTTCGAAGAGTTGAAAAAGGCTTATCGCCCTGAATTTATCAACCGTATTGATGAAAAAGTAGTC
TTCCACAGTTTGACAGAGTCGGATATGTTGGATGTTGTCAAAGTGATGGTGAAGCCATTGATTGCGGTTGCCGCGAGCAA
GGGAATCCTTCTGAAACTTCAACCATCAGCTCTTAAATTGCTGGCCAAGGAAGGCTATGATCCAGAAATGGGTGCCCGTC
CACTCCGTCGTTTGCTCCAAACAAAATTGGAAGATCCGATGGCGGAAATGCTCTTGCGCGAAGATGTTGGTGCAGGTATG
ACCTTGAAAGTGGGTGTCAAGGCCAACCAGCTCAAGTTTGAGAGTGTGAACGAATAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (724-803)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-132)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (16-62)

• AAA domain (Cdc48 subfamily) (AAA_2) (546-717)

• ATPase family associated with various cellular activities (AAA) (AAA) (234-366)

• AAA lid domain (AAA_lid_9) (373-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	71.358	99.022	0.707
clpC	Streptococcus pneumoniae Rx1	71.358	99.022	0.707
clpC	Streptococcus pneumoniae D39	71.358	99.022	0.707
clpC	Streptococcus thermophilus LMG 18311	65.286	100	0.655
clpC	Streptococcus thermophilus LMD-9	65.043	100	0.653
clpC	Streptococcus mutans UA159	65.926	99.022	0.653
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.019	100	0.489
clpC	Bacillus subtilis subsp. subtilis str. 168	43.095	100	0.443