Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PXH68_RS07800 Genome accession   NZ_CP118733
Coordinates   1687121..1688905 (-) Length   594 a.a.
NCBI ID   WP_248028275.1    Uniprot ID   A0AA96VED5
Organism   Streptococcus suivaginalis strain 29896     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682121..1693905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS07780 (PXH68_07780) - 1683052..1683954 (-) 903 WP_248028272.1 ABC transporter permease -
  PXH68_RS07785 (PXH68_07785) opp4B 1683966..1684922 (-) 957 WP_248028273.1 oligopeptide ABC transporter permease -
  PXH68_RS07790 (PXH68_07790) - 1684925..1685866 (-) 942 WP_248028274.1 ATP-binding cassette domain-containing protein -
  PXH68_RS07795 (PXH68_07795) - 1685869..1686867 (-) 999 WP_172044501.1 ABC transporter ATP-binding protein -
  PXH68_RS07800 (PXH68_07800) oppA 1687121..1688905 (-) 1785 WP_248028275.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PXH68_RS07805 (PXH68_07805) pbp3 1689189..1690436 (+) 1248 WP_248028276.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PXH68_RS07810 (PXH68_07810) sufB 1690810..1692225 (-) 1416 WP_105210248.1 Fe-S cluster assembly protein SufB -
  PXH68_RS07815 (PXH68_07815) sufU 1692361..1692801 (-) 441 WP_248028277.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65257.73 Da        Isoelectric Point: 4.3556

>NTDB_id=794647 PXH68_RS07800 WP_248028275.1 1687121..1688905(-) (oppA) [Streptococcus suivaginalis strain 29896]
MKKSSKLLALAGVSILSASVLAACGSSSSSKTATQNTTFPTEVSNEGTAIKGGQLNYAVVAASPSTGLLIDELTDNNVDS
TFGGMVDVPIFSYDGNRKLDDSGLAKPEFDTENKTVTVTLTGKDYKWSDGEAFTIDDYIFTIKALADKGYTGVRFDDTYT
NIVGMDEYREGTATDISGIKKVDDYTVVLTMKKMTPSMMYAGGAVPAHIAPEHIYKDIPVADWEKSEYSRTAKHVGMGPF
TIKEMVSGESVTFAANPNYYKGQPKVDTVKMDIVSPDTIVSEMKAGNYDIADMPSDQLDSYKDFSNITLTGAIGSNYEYI
GFNLGKYDTEAETNVMNENAKMNDVKLRQAMGYALDTKTAGESLYNGLYKPAKSLIISFFGDIHDSELAGYTYDPEKANK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANETLVQQYLAWWKEVGLNVELYTGRTIETNSFYDMLQASDQNID
VYAGGWSTGYDPDPSGLYGPDAMFNFSHFVSDENTELLKAISSEASFDEATNLKNYKAWQTYAFEQAFVIPTFESEVLTA
VNKRVKYYDRLYGSASKAGWEQIELVADKGVVAE

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=794647 PXH68_RS07800 WP_248028275.1 1687121..1688905(-) (oppA) [Streptococcus suivaginalis strain 29896]
ATGAAAAAGTCAAGTAAACTTCTTGCCTTAGCTGGTGTGTCGATTTTGTCAGCTTCTGTCCTTGCAGCATGTGGTTCGAG
CTCAAGTTCAAAAACAGCTACACAAAATACAACTTTCCCAACTGAAGTATCCAACGAAGGTACTGCAATTAAAGGCGGAC
AATTGAACTATGCGGTTGTTGCTGCATCTCCATCTACTGGTTTGTTGATTGATGAGTTGACGGATAACAATGTAGACTCT
ACTTTCGGTGGCATGGTTGATGTACCGATCTTCAGCTATGATGGAAACCGTAAATTGGACGATTCAGGTCTTGCAAAACC
AGAATTTGACACTGAGAACAAGACTGTAACGGTAACCTTGACTGGTAAAGACTACAAGTGGTCAGATGGTGAAGCCTTCA
CTATCGATGACTACATCTTCACTATCAAGGCTTTAGCTGACAAGGGCTATACTGGTGTACGTTTTGATGATACATATACA
AACATCGTTGGTATGGATGAGTATCGTGAAGGTACTGCAACGGACATCTCTGGTATCAAAAAAGTGGATGACTACACTGT
TGTCTTGACAATGAAGAAAATGACGCCTTCTATGATGTATGCAGGTGGTGCTGTGCCAGCTCACATTGCACCTGAACACA
TCTATAAAGATATTCCAGTTGCAGATTGGGAAAAGAGCGAGTACTCTCGTACAGCTAAGCACGTAGGTATGGGTCCATTC
ACGATCAAAGAAATGGTAAGTGGTGAGTCCGTAACCTTTGCAGCAAACCCTAACTACTACAAAGGTCAACCAAAAGTTGA
CACTGTGAAGATGGATATCGTTTCTCCAGATACAATCGTATCCGAAATGAAAGCCGGTAACTACGATATCGCAGACATGC
CAAGTGATCAATTGGATTCTTACAAAGACTTCTCAAACATCACCTTGACAGGTGCGATTGGTTCTAACTACGAGTACATT
GGTTTCAACCTAGGTAAATACGATACTGAAGCTGAAACAAACGTTATGAACGAAAATGCCAAGATGAACGATGTAAAACT
TCGTCAAGCTATGGGTTACGCTTTGGATACTAAGACTGCAGGTGAGAGTCTCTACAATGGTCTGTATAAACCAGCTAAGT
CATTGATTATCTCATTCTTCGGTGATATCCATGATTCAGAATTGGCAGGCTATACTTACGATCCAGAAAAAGCAAATAAA
TTGCTTGATGAAGCTGGCTATAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAATTCAAGATTAC
ATTTGCTGCTCGTAAACGTACAGAAGCAAATGAAACATTGGTACAACAATACCTTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTAGAATTGTACACAGGTCGTACAATTGAGACGAACTCATTCTACGATATGCTTCAAGCTAGCGACCAAAACATTGAC
GTTTACGCAGGTGGATGGTCAACAGGTTACGATCCAGATCCATCTGGTTTGTATGGTCCAGATGCGATGTTCAACTTCAG
CCACTTCGTATCAGATGAAAATACTGAATTATTGAAAGCAATTTCTTCAGAAGCATCATTTGATGAGGCGACTAACCTTA
AAAACTATAAAGCATGGCAGACATATGCTTTTGAGCAAGCGTTTGTAATTCCTACATTTGAATCAGAAGTATTGACTGCG
GTTAACAAGCGTGTGAAATACTATGACCGTCTCTACGGATCAGCTTCAAAAGCAGGATGGGAGCAAATTGAATTAGTTGC
TGATAAAGGTGTCGTTGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

73.534

100

0.739