Detailed information NTG0794645

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: PXH68_RS07560
• Genome accession: NZ_CP118733
• Coordinates: 1648354..1650453 (-)
• Length: 699 a.a.
• NCBI ID: WP_248027631.1
• Uniprot ID: A0AA97A0H2
• Organism: Streptococcus suivaginalis strain 29896
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1643354..1655453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PXH68_RS07545 (PXH68_07545)	-	1643606..1644313 (+)	708	WP_205031517.1	UTRA domain-containing protein	-
PXH68_RS07550 (PXH68_07550)	glgP	1644383..1646647 (-)	2265	WP_248027628.1	glycogen/starch/alpha-glucan family phosphorylase	-
PXH68_RS07555 (PXH68_07555)	malQ	1646640..1648148 (-)	1509	WP_248027630.1	4-alpha-glucanotransferase	-
PXH68_RS07560 (PXH68_07560)	clpC	1648354..1650453 (-)	2100	WP_248027631.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
PXH68_RS07565 (PXH68_07565)	-	1650870..1651280 (-)	411	WP_248027633.1	peptide deformylase	-
PXH68_RS07570 (PXH68_07570)	-	1651353..1652081 (-)	729	WP_248027635.1	MerR family transcriptional regulator	-
PXH68_RS07575 (PXH68_07575)	-	1652160..1653248 (-)	1089	WP_248027637.1	nucleotidyltransferase	-
PXH68_RS07580 (PXH68_07580)	-	1653245..1653991 (-)	747	WP_248027639.1	class I SAM-dependent DNA methyltransferase	-
PXH68_RS07585 (PXH68_07585)	-	1654003..1654449 (-)	447	WP_248027641.1	HNH endonuclease	-
PXH68_RS07590 (PXH68_07590)	rsfS	1654569..1654928 (-)	360	WP_172115766.1	ribosome silencing factor	-
PXH68_RS07595 (PXH68_07595)	-	1654930..1655439 (-)	510	WP_248027643.1	cysteine hydrolase family protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77318.97 Da
• Isoelectric Point: 4.7409

>NTDB_id=794645 PXH68_RS07560 WP_248027631.1 1648354..1650453(-) (clpC) [Streptococcus suivaginalis strain 29896]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAIYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQALEAEIEQAKALQSQAAEKEDYETALNEKVRIDKLQEQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKHRLETNVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKEAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTLV
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLGKEDLKAIVDLMLGQVNKTLAKKGIHLEVTEAVK
EFLMEEGYDQAMGARPLRRVIENQIRDKVTDYYLDHLDVTNLLADVVENEIQISEQTFS

Nucleotide

• Length: 2100 bp

>NTDB_id=794645 PXH68_RS07560 WP_248027631.1 1648354..1650453(-) (clpC) [Streptococcus suivaginalis strain 29896]
ATGAACAACAATTTCAATAATTTTAACAATATGGATGATATTTTCAATCAACTCATGGGGAACATGGGTGGCTACAGTAC
AGAGCGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCGGAGGAATTTGCCATTTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACTCAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTGGCAAAACTGGGCCGCAAT
TTGACACAAGATGCGCGTGAAGGCAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATTCAAGAAACATCTGAAATTCT
GGCTCGCCGTACCAAGAACAATCCTGTTTTGGTCGGTGATGCGGGTGTAGGTAAAACTGCGGTAGTAGAAGGTTTGGCTC
AGGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAATAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAAGCT
GGGACTCAGTACCGTGGAGCTTTTGAAGAAAATGTCCAAAATCTTGTGGATGAAGTCAAAAAAGCTGGCAATATCATTCT
CTTTTTTGATGAGATTCATCAGATTTTGGGAGCTGGTAGCACTGGTGGAGACTCAGGTTCCAAGGGCTTAGCAGATATTC
TCAAACCAGCCCTGTCACGTGGAGAGTTGACCGTCATTGGTGCGACCACGCAAGACGAGTACCGCAATACCATTCACAAG
AACGCCGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTTAATGCTCCGTCCGCAGAAGATACCTACCAGATTTTGAAAGG
TATCAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTCTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGGTCGATGTGACTGCTGCTCACTTAGCTGCACAACAT
CCTGTTACAGATATCCAAGCTTTGGAGGCAGAGATTGAACAGGCTAAAGCTTTGCAAAGTCAGGCAGCTGAAAAAGAAGA
TTACGAAACAGCACTCAATGAAAAAGTCCGCATCGACAAGCTCCAAGAACAAATTGACAACCACACAGAGCAACAGAAAG
TGGTAGCGACTGTTAATGATGTAGCTCAGGCGGTTGAGCGAATGACAGGCATCCCAGTCTCTCAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAGCATCGCCTGGAGACAAATGTAATTGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGCAATCGTGCAGGTTTTGATGACGGCAACCGTCCAATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGAGGCCATTATTCGTTTGGATATGTCT
GAATACAGTGACCGTACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGTTATGTTGGTTATGATGATAATTCCCATAC
TCTTACCGAGCGTGTCCGCCGCAATCCATACTCCATTGTCCTCTTGGATGAGATTGAAAAGGCAGATCCACAAGTGATTA
CCCTCCTTTTGCAAGTACTAGACGATGGTCATTTGACAGACGGACAGGGCAACCAGGTCAACTTCAAAAATACCCTTGTC
ATCGCGACTTCAAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGTCCGGAGTTCCTTAACCGTTTCAACGCAGTTATCGAATTCAAACACTTGGGCAAAGAAGACCTCAAGGCTA
TCGTAGATTTGATGTTAGGCCAGGTCAATAAGACCCTAGCTAAAAAAGGTATTCACTTAGAAGTGACTGAGGCAGTCAAA
GAGTTCTTGATGGAAGAAGGCTATGATCAGGCTATGGGAGCTCGTCCATTGCGCCGTGTGATTGAAAATCAGATTCGAGA
CAAGGTAACGGATTACTATCTGGATCACTTAGATGTGACCAACTTGTTGGCTGATGTGGTGGAAAATGAGATTCAAATCA
GCGAGCAAACCTTTTCATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.801	100	0.482
clpE	Streptococcus mutans UA159	49.764	90.844	0.452
clpE	Streptococcus pneumoniae Rx1	49.605	90.558	0.449
clpE	Streptococcus pneumoniae D39	49.605	90.558	0.449
clpE	Streptococcus pneumoniae R6	49.605	90.558	0.449
clpE	Streptococcus pneumoniae TIGR4	49.605	90.558	0.449
clpC	Bacillus subtilis subsp. subtilis str. 168	45.513	89.27	0.406
clpC	Streptococcus pneumoniae Rx1	42.089	93.133	0.392
clpC	Streptococcus pneumoniae D39	42.089	93.133	0.392
clpC	Streptococcus pneumoniae TIGR4	41.935	93.133	0.391
clpC	Streptococcus thermophilus LMG 18311	42.631	90.272	0.385
clpC	Streptococcus thermophilus LMD-9	43.296	88.555	0.383
clpC	Streptococcus mutans UA159	42.697	89.127	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.165	88.555	0.373