Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PXH68_RS01035 Genome accession   NZ_CP118733
Coordinates   203492..204205 (+) Length   237 a.a.
NCBI ID   WP_248028696.1    Uniprot ID   A0AA96VDM3
Organism   Streptococcus suivaginalis strain 29896     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 199182..208634 203492..204205 within 0


Gene organization within MGE regions


Location: 199182..208634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS01020 (PXH68_01020) - 199182..199544 (-) 363 WP_248028698.1 iron chaperone -
  PXH68_RS01025 (PXH68_01025) treC 199609..201234 (-) 1626 WP_248028697.1 alpha,alpha-phosphotrehalase -
  PXH68_RS09865 - 201318..201770 (-) 453 Protein_169 PTS glucose transporter subunit IIA -
  PXH68_RS01030 (PXH68_01030) treP 201857..203298 (-) 1442 Protein_170 PTS system trehalose-specific EIIBC component -
  PXH68_RS01035 (PXH68_01035) treR 203492..204205 (+) 714 WP_248028696.1 trehalose operon repressor Regulator
  PXH68_RS01040 (PXH68_01040) zapA 204264..204575 (+) 312 WP_158455962.1 cell division protein ZapA -
  PXH68_RS01045 (PXH68_01045) - 204572..205123 (+) 552 WP_248028695.1 CvpA family protein -
  PXH68_RS01050 (PXH68_01050) - 205183..207516 (+) 2334 WP_248028694.1 endonuclease MutS2 -
  PXH68_RS01055 (PXH68_01055) - 207681..208067 (+) 387 WP_029172292.1 DUF1310 family protein -
  PXH68_RS01060 (PXH68_01060) - 208064..208240 (+) 177 WP_193433962.1 hypothetical protein -
  PXH68_RS01065 (PXH68_01065) - 208242..208634 (+) 393 WP_248028693.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27243.08 Da        Isoelectric Point: 8.2633

>NTDB_id=794615 PXH68_RS01035 WP_248028696.1 203492..204205(+) (treR) [Streptococcus suivaginalis strain 29896]
MKKYQEIFNDIKDKILSDYYSAGTSLPTEKDLQELYGVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPVSGLT
SYQELTQSLQLQSQTNVVELDVVSVSTSLSKLTGFEAYSKVWKIVRTRSIDGKVSVIDTDYLAHDLVPHMTREIASQSIY
DYLENKLGLDISFAQKEITIEPTNREEKALLQSQDDYLVLIKSRVFLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=794615 PXH68_RS01035 WP_248028696.1 203492..204205(+) (treR) [Streptococcus suivaginalis strain 29896]
ATGAAAAAATACCAAGAAATTTTTAACGATATTAAAGACAAGATTTTGAGTGATTACTACAGTGCAGGAACTTCCTTGCC
AACAGAAAAGGACCTGCAGGAGCTCTATGGGGTCAGTCGTGACACGGTTCGTAAGGCATTGGCGATTTTGACCGAACGGG
GCATGATTCAAAAGGTTCAAGGGAGAGGTTCGCTGGTCTTGAAGCAAGAACTCTTGAATTTTCCAGTCTCTGGTTTGACT
TCTTATCAGGAGTTGACCCAATCCTTACAACTACAAAGTCAAACGAATGTAGTGGAGTTGGACGTGGTCTCAGTTTCAAC
TAGTTTGTCAAAACTAACAGGCTTTGAGGCTTACAGCAAGGTATGGAAGATTGTCCGTACAAGATCTATCGATGGGAAGG
TTTCAGTAATCGATACGGACTACCTTGCCCATGACTTGGTTCCCCATATGACCAGAGAGATTGCTAGTCAGTCTATCTAT
GATTATTTGGAAAATAAACTTGGCCTGGATATTTCTTTTGCCCAAAAAGAGATTACAATTGAACCAACCAACCGAGAGGA
AAAGGCCCTACTTCAGAGCCAGGATGACTATCTGGTCTTGATCAAATCCCGAGTCTTTTTAGGGGATACCCGTCAGTTCC
AATATACTGAGAGCAAGCATAAGATTGACAAGTTCCGTTTCGTGGATTTTGCCCGCCGCAAGCATTCTCTCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

55.128

98.734

0.544