Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PWO00_RS17070 Genome accession   NZ_CP118718
Coordinates   3299953..3300375 (+) Length   140 a.a.
NCBI ID   WP_013083984.1    Uniprot ID   A0A1Q8UP88
Organism   Priestia aryabhattai strain G5MAi6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3294953..3305375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO00_RS17045 (PWO00_17040) - 3295157..3295978 (+) 822 WP_275035995.1 sensor histidine kinase -
  PWO00_RS17050 (PWO00_17045) - 3295979..3296620 (+) 642 WP_014459245.1 response regulator -
  PWO00_RS17055 (PWO00_17050) - 3296797..3297783 (+) 987 WP_275035996.1 glycerophosphodiester phosphodiesterase family protein -
  PWO00_RS17060 (PWO00_17055) - 3297936..3299318 (+) 1383 WP_275035997.1 PepSY-associated TM helix domain-containing protein -
  PWO00_RS17065 (PWO00_17060) - 3299348..3299812 (+) 465 WP_275035998.1 FixH family protein -
  PWO00_RS17070 (PWO00_17065) nucA/comI 3299953..3300375 (+) 423 WP_013083984.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PWO00_RS17075 (PWO00_17070) - 3300530..3300883 (+) 354 WP_249276190.1 DUF1516 family protein -
  PWO00_RS17080 (PWO00_17075) - 3300924..3301517 (-) 594 WP_028409296.1 hypothetical protein -
  PWO00_RS17085 (PWO00_17080) - 3301670..3302326 (-) 657 WP_275035999.1 TetR/AcrR family transcriptional regulator -
  PWO00_RS17090 (PWO00_17085) - 3302350..3303630 (-) 1281 WP_275036000.1 glycosyltransferase -
  PWO00_RS17095 (PWO00_17090) - 3303960..3304445 (-) 486 WP_275036001.1 hypothetical protein -
  PWO00_RS17100 (PWO00_17095) fsa 3304524..3305192 (-) 669 WP_275036002.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15356.20 Da        Isoelectric Point: 4.4990

>NTDB_id=794549 PWO00_RS17070 WP_013083984.1 3299953..3300375(+) (nucA/comI) [Priestia aryabhattai strain G5MAi6]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGNGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=794549 PWO00_RS17070 WP_013083984.1 3299953..3300375(+) (nucA/comI) [Priestia aryabhattai strain G5MAi6]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATTGACCGAGACGGTGCTGAAGAAAACCGCCGTGAATCTTTAAAA
GGCATTCCGACTAAAAGCGGCTACGATCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAACGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATCTCACATCAAGTGGACGAGTTTCCAGACGGCACGA
AGGTTTTAATTGAAGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8UP88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507