Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PWJ66_RS14430 Genome accession   NZ_CP118714
Coordinates   2952560..2954251 (-) Length   563 a.a.
NCBI ID   WP_208705719.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain G5.M11b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2947560..2959251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWJ66_RS14410 (PWJ66_14360) - 2948038..2949609 (-) 1572 WP_008179917.1 DUF342 domain-containing protein -
  PWJ66_RS14415 (PWJ66_14365) - 2949943..2950170 (-) 228 WP_274991393.1 hypothetical protein -
  PWJ66_RS14420 (PWJ66_14370) spo0A 2950305..2951096 (-) 792 WP_008179911.1 sporulation transcription factor Spo0A -
  PWJ66_RS14425 (PWJ66_14375) - 2951491..2952438 (-) 948 WP_008179909.1 SpoIVB peptidase S55 domain-containing protein -
  PWJ66_RS14430 (PWJ66_14380) recN 2952560..2954251 (-) 1692 WP_208705719.1 DNA repair protein RecN Machinery gene
  PWJ66_RS14435 (PWJ66_14385) ahrC 2954285..2954734 (-) 450 WP_008179906.1 transcriptional regulator AhrC/ArgR -
  PWJ66_RS14440 (PWJ66_14390) - 2954835..2955653 (-) 819 WP_036126928.1 TlyA family RNA methyltransferase -
  PWJ66_RS14445 (PWJ66_14395) dxs 2955653..2957554 (-) 1902 WP_036126930.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PWJ66_RS14450 (PWJ66_14400) - 2957717..2958598 (-) 882 WP_025116086.1 polyprenyl synthetase family protein -
  PWJ66_RS14455 (PWJ66_14405) xseB 2958602..2958835 (-) 234 WP_036126931.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63556.40 Da        Isoelectric Point: 4.6506

>NTDB_id=794505 PWJ66_RS14430 WP_208705719.1 2952560..2954251(-) (recN) [Lysinibacillus fusiformis strain G5.M11b]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPKQ
KIYSEQYEEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAVTVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELATELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELPYFDATGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=794505 PWJ66_RS14430 WP_208705719.1 2952560..2954251(-) (recN) [Lysinibacillus fusiformis strain G5.M11b]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTGAGTTTTTCTGAAGGATTGACTGTACT
GACGGGGGAAACTGGTGCTGGTAAATCTATTATTATTGATGCTGTTCATTTACTTGCTGGTGGACGGGGAAATACTGAAT
TTATTCGTCATGGGGCAAGAAAGGCTGAATTAGGTGGCTTATTTCAAATTTCGAATTCCACGCATCCTGTGCTAAAAAAA
TTAGAAGAAGCAGGCATTGAAATTGAAGAAGATACAGTTATTTTACGTCGTGATCTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCAGTACTGAGAGAAATTGGTGGGAGTCTCATTGATATTCATGGCCAACATG
AAAACCAAGAGCTGATGGATGAAAAACAGCATATCAATTTACTCGACCAGTTTGCAGAAGAGCAGCTGCTGCCTAAACAA
AAAATATACAGCGAACAATATGAAGAATATCGATTGCTGAAAAAGGACTTAGCCTCGATTTCCATCGATGAACAATTGAT
GGCACAACGCATTGATTTGTATCAATTCCAAATAAAAGAGCTAGAGGAAGCCAATTTAAGGCTAGGTGAGGAAGATGAAC
TTCTTGATGAACGCCGTCGTCTCATGAATTACAATAAAATTTTTGAACGTTCTAGTGCTGCCTATGAGGCCATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGTAATGCAATGGGTGCCTTGGACGATGCAGTAACAGTGGACGAGCAATTCAAAGA
AGCTTCTGAGGCAGTGACAACGGCATTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAATTGG
AGTTTGATCCAGCGCGTTTAAATGAGGTAGAACAACGATTAGCACTATTCCAAAATTTAAAACGCAAATATGGCTCGACT
GTGGAGGACATTTTAGCATATTTTGAAAAAATAAAAATAGAGTTAAATGAGCTGCTGAATCGCGATGAAATTTTGCAGGT
GAAAGAACGAAGAGTGCTCGAAATGGAATCGGTGCTCAATGAGCTTGCTACAGAACTTTCAACTGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGGGAATTACATATGGAAAAAGCTAAATTTATTGTCAATTTTGAA
GAATTACCATATTTCGATGCAACTGGAAAAGATCAAATTATTTTTTATATTTCTACCAATGTTGGAGAACCGCCAAAATC
CTTACCGAAAATTGCCTCGGGAGGAGAATTATCACGAATGATGCTTGCGCTGAAAACCATTTTCTCTTCTTCTAATGGTA
TCACATCCATCATTTTTGATGAAGTAGACACAGGAGTTAGTGGAAGAGTGGCACAAGCCATTGCAGAAAAAATTGCAGCG
GTATCCATTAATTCTCAAGTGCTATGTATTTCACATTTACCTCAAGTTGCTGCGATGGCTGATCATCATTACTTCATTAA
GAAAGAAGTTGAGCATGATCGAACATTTACGTCTTTATCAGAAATTGATCAAAAGGCTCGAATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTAACGCTTCAGCATGCAACGGAGTTATTAACAATGGCAGAAGAGCGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542