Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QQN98_RS20250 Genome accession   NZ_CP132019
Coordinates   4214232..4215449 (+) Length   405 a.a.
NCBI ID   WP_021523265.1    Uniprot ID   -
Organism   Escherichia coli strain JCH767     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4209232..4220449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN98_RS20235 (QQN98_20235) - 4209747..4211423 (+) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -
  QQN98_RS20240 (QQN98_20240) kdsB 4211433..4212173 (+) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQN98_RS20245 (QQN98_20245) - 4212170..4214197 (+) 2028 WP_000579533.1 capsular polysaccharide biosynthesis protein -
  QQN98_RS20250 (QQN98_20250) kpsS 4214232..4215449 (+) 1218 WP_021523265.1 capsule biosynthesis protein Regulator
  QQN98_RS20255 (QQN98_20255) - 4215601..4216941 (-) 1341 WP_016231189.1 glycosyltransferase family A protein -
  QQN98_RS20260 (QQN98_20260) - 4217070..4218239 (-) 1170 WP_016231190.1 nucleotide sugar dehydrogenase -
  QQN98_RS20265 (QQN98_20265) - 4218377..4219504 (-) 1128 WP_016231191.1 polysaccharide pyruvyl transferase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 48449.20 Da        Isoelectric Point: 10.2265

>NTDB_id=794493 QQN98_RS20250 WP_021523265.1 4214232..4215449(+) (kpsS) [Escherichia coli strain JCH767]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPWLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKI
KKIKR

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=794493 QQN98_RS20250 WP_021523265.1 4214232..4215449(+) (kpsS) [Escherichia coli strain JCH767]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGTGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAGATA
AAAAAGATAAAAAGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.899

97.778

0.39