Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQN98_RS09210 Genome accession   NZ_CP132019
Coordinates   1952527..1953156 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain JCH767     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947527..1958156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN98_RS09190 (QQN98_09190) ycbZ 1947917..1949677 (-) 1761 WP_000156479.1 Lon protease family protein -
  QQN98_RS09195 (QQN98_09195) matP 1949863..1950315 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQN98_RS09200 (QQN98_09200) ompA 1950390..1951442 (-) 1053 WP_000750418.1 porin OmpA -
  QQN98_RS09205 (QQN98_09205) sulA 1951799..1952308 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  QQN98_RS09210 (QQN98_09210) sxy/tfoX 1952527..1953156 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQN98_RS09215 (QQN98_09215) yccS 1953119..1955281 (-) 2163 WP_001550920.1 YccS family putative transporter -
  QQN98_RS09220 (QQN98_09220) yccF 1955291..1955737 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QQN98_RS09225 (QQN98_09225) helD 1955860..1957914 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=794461 QQN98_RS09210 WP_000839153.1 1952527..1953156(+) (sxy/tfoX) [Escherichia coli strain JCH767]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=794461 QQN98_RS09210 WP_000839153.1 1952527..1953156(+) (sxy/tfoX) [Escherichia coli strain JCH767]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1