Detailed information
Bioinformatically predicted
Overview
| Name | rpoN/rpoN1 | Type | Machinery gene |
| Locus tag | PWO56_RS01710 | Genome accession | NZ_CP118699 |
| Coordinates | 358582..360021 (+) | Length | 479 a.a. |
| NCBI ID | WP_270697340.1 | Uniprot ID | - |
| Organism | Aeromonas hydrophila strain K522 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 331483..358516 | 358582..360021 | flank | 66 |
Gene organization within MGE regions
Location: 331483..360021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWO56_RS01550 (PWO56_01550) | - | 331483..332778 (+) | 1296 | WP_190283808.1 | tyrosine-type recombinase/integrase | - |
| PWO56_RS01555 (PWO56_01555) | - | 333027..333701 (-) | 675 | WP_190283807.1 | KilA-N domain-containing protein | - |
| PWO56_RS01560 (PWO56_01560) | - | 333902..334786 (-) | 885 | WP_270697771.1 | hypothetical protein | - |
| PWO56_RS01565 (PWO56_01565) | istA | 335010..336551 (+) | 1542 | WP_010673729.1 | IS21-like element ISAs29 family transposase | - |
| PWO56_RS01570 (PWO56_01570) | istB | 336566..337321 (+) | 756 | WP_000194037.1 | IS21-like element ISAs29 family helper ATPase IstB | - |
| PWO56_RS01575 (PWO56_01575) | - | 337381..338283 (-) | 903 | WP_270697342.1 | hypothetical protein | - |
| PWO56_RS01580 (PWO56_01580) | - | 338396..338866 (-) | 471 | WP_190283805.1 | ribonuclease H | - |
| PWO56_RS01585 (PWO56_01585) | - | 338863..339063 (-) | 201 | WP_190283804.1 | hypothetical protein | - |
| PWO56_RS01590 (PWO56_01590) | - | 339063..339275 (-) | 213 | WP_024945729.1 | hypothetical protein | - |
| PWO56_RS01595 (PWO56_01595) | - | 339333..339836 (-) | 504 | WP_190283803.1 | hypothetical protein | - |
| PWO56_RS01600 (PWO56_01600) | - | 339947..340534 (-) | 588 | WP_232105271.1 | hypothetical protein | - |
| PWO56_RS01605 (PWO56_01605) | - | 340531..341187 (-) | 657 | WP_190283802.1 | phage regulatory protein/antirepressor Ant | - |
| PWO56_RS01610 (PWO56_01610) | - | 341192..341422 (-) | 231 | WP_109422082.1 | hypothetical protein | - |
| PWO56_RS01615 (PWO56_01615) | - | 341648..342733 (-) | 1086 | WP_190283801.1 | capsid protein | - |
| PWO56_RS01620 (PWO56_01620) | - | 343832..344056 (-) | 225 | WP_269150387.1 | helix-turn-helix domain-containing protein | - |
| PWO56_RS01625 (PWO56_01625) | - | 345906..346475 (-) | 570 | WP_114522673.1 | recombinase family protein | - |
| PWO56_RS01630 (PWO56_01630) | - | 346489..346701 (-) | 213 | WP_190283800.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| PWO56_RS01635 (PWO56_01635) | - | 346896..347582 (-) | 687 | WP_270697341.1 | antirestriction protein ArdA | - |
| PWO56_RS01640 (PWO56_01640) | - | 348377..348931 (-) | 555 | WP_190283799.1 | hypothetical protein | - |
| PWO56_RS01645 (PWO56_01645) | pmbA | 349010..350353 (+) | 1344 | WP_011707624.1 | metalloprotease PmbA | - |
| PWO56_RS01650 (PWO56_01650) | murA | 350439..351695 (-) | 1257 | WP_011707623.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| PWO56_RS01655 (PWO56_01655) | ibaG | 351713..351970 (-) | 258 | WP_005306001.1 | BolA family iron metabolism protein IbaG | - |
| PWO56_RS01660 (PWO56_01660) | - | 351970..352242 (-) | 273 | WP_077095258.1 | STAS domain-containing protein | - |
| PWO56_RS01665 (PWO56_01665) | mlaC | 352239..352871 (-) | 633 | WP_043160671.1 | phospholipid-binding protein MlaC | - |
| PWO56_RS01670 (PWO56_01670) | mlaD | 352881..353372 (-) | 492 | WP_011707620.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| PWO56_RS01675 (PWO56_01675) | mlaE | 353380..354159 (-) | 780 | WP_011707619.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| PWO56_RS01680 (PWO56_01680) | mlaF | 354159..354959 (-) | 801 | WP_011707618.1 | phospholipid ABC transporter ATP-binding protein MlaF | - |
| PWO56_RS01685 (PWO56_01685) | - | 355167..356162 (+) | 996 | WP_017409369.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| PWO56_RS01690 (PWO56_01690) | kdsC | 356162..356716 (+) | 555 | WP_077095257.1 | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | - |
| PWO56_RS01695 (PWO56_01695) | lptC | 356713..357273 (+) | 561 | WP_016352199.1 | LPS export ABC transporter periplasmic protein LptC | - |
| PWO56_RS01700 (PWO56_01700) | lptA | 357260..357787 (+) | 528 | WP_016352198.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| PWO56_RS01705 (PWO56_01705) | lptB | 357791..358516 (+) | 726 | WP_011707613.1 | LPS export ABC transporter ATP-binding protein | - |
| PWO56_RS01710 (PWO56_01710) | rpoN/rpoN1 | 358582..360021 (+) | 1440 | WP_270697340.1 | RNA polymerase factor sigma-54 | Machinery gene |
Sequence
Protein
Download Length: 479 a.a. Molecular weight: 53839.68 Da Isoelectric Point: 4.3442
>NTDB_id=794441 PWO56_RS01710 WP_270697340.1 358582..360021(+) (rpoN/rpoN1) [Aeromonas hydrophila strain K522]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPEEPVDASQLDSSDAMSQDNMP
DELPVDTTWEEVYSAGTAQSAGPNHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQTAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPEEPVDASQLDSSDAMSQDNMP
DELPVDTTWEEVYSAGTAQSAGPNHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQTAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV
Nucleotide
Download Length: 1440 bp
>NTDB_id=794441 PWO56_RS01710 WP_270697340.1 358582..360021(+) (rpoN/rpoN1) [Aeromonas hydrophila strain K522]
ATGAAGCCGACATTACAGTTGCGTCTCGGCCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAAGAAAATGATG
TGCAGGAGACCAGCCCGGAAGAGCCGGTCGATGCCAGCCAACTCGACTCCAGCGATGCCATGTCCCAGGACAACATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGAGGTCTACTCGGCTGGCACGGCCCAGAGCGCGGGCCCGAACCACGACGG
CGAAGACAGCATCTATCAGGGCGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGCCTGACCCCATTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATTATCGACGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTGGAAGAT
ATCCAGACTGCGGTAAGCAGCGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCGGTGCTCAAGCGGGTGCAACATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAATACTCCCCGGACCTGCCTT
GGCTCAACGAGGCCAAGGAGGTGATTCTCGAGCACATGGACTTGCTCGGCAATCGCGACTACCGCACCCTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCAGCTGGAGCCGAGACCCGGCAACGGCGTCAT
TCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAATCCGG
ACTCGGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCTCGCACCAGCCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGCCGCAACGACACCTTGCTCAAGGTGGCCAG
CTGTATCGTCGAGCAGCAGCAGGGCTTTTTTGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTCACGACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCTAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG
ATGAAGCCGACATTACAGTTGCGTCTCGGCCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAAGAAAATGATG
TGCAGGAGACCAGCCCGGAAGAGCCGGTCGATGCCAGCCAACTCGACTCCAGCGATGCCATGTCCCAGGACAACATGCCG
GACGAACTGCCGGTAGATACCACCTGGGAAGAGGTCTACTCGGCTGGCACGGCCCAGAGCGCGGGCCCGAACCACGACGG
CGAAGACAGCATCTATCAGGGCGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGCCTGACCCCATTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATTATCGACGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTGGAAGAT
ATCCAGACTGCGGTAAGCAGCGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCGGTGCTCAAGCGGGTGCAACATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAATACTCCCCGGACCTGCCTT
GGCTCAACGAGGCCAAGGAGGTGATTCTCGAGCACATGGACTTGCTCGGCAATCGCGACTACCGCACCCTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCAGCTGGAGCCGAGACCCGGCAACGGCGTCAT
TCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAATCCGG
ACTCGGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCTCGCACCAGCCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGCCGCAACGACACCTTGCTCAAGGTGGCCAG
CTGTATCGTCGAGCAGCAGCAGGGCTTTTTTGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTCACGACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCTAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoN/rpoN1 | Ralstonia pseudosolanacearum GMI1000 |
45.545 |
100 |
0.48 |