Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PYG29_RS04990 Genome accession   NZ_CP118686
Coordinates   1084883..1085359 (-) Length   158 a.a.
NCBI ID   WP_309619031.1    Uniprot ID   -
Organism   Snodgrassella communis strain B10998     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079883..1090359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYG29_RS04970 (PYG29_04970) lpdA 1080226..1081980 (+) 1755 WP_309619028.1 dihydrolipoyl dehydrogenase -
  PYG29_RS04975 (PYG29_04975) - 1082251..1083369 (+) 1119 WP_374708365.1 AI-2E family transporter -
  PYG29_RS04980 (PYG29_04980) rpsT 1083499..1083765 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  PYG29_RS04985 (PYG29_04985) - 1083798..1084751 (+) 954 WP_309619030.1 bile acid:sodium symporter family protein -
  PYG29_RS04990 (PYG29_04990) recX 1084883..1085359 (-) 477 WP_309619031.1 recombination regulator RecX Regulator
  PYG29_RS04995 (PYG29_04995) - 1085356..1086063 (-) 708 WP_093091559.1 phosphoglycolate phosphatase -
  PYG29_RS05000 (PYG29_05000) - 1086212..1087282 (-) 1071 WP_239424112.1 aldose epimerase family protein -
  PYG29_RS05005 (PYG29_05005) - 1087269..1088585 (-) 1317 WP_239424113.1 replication-associated recombination protein A -
  PYG29_RS05010 (PYG29_05010) - 1088729..1089094 (+) 366 WP_309619032.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18538.14 Da        Isoelectric Point: 9.1675

>NTDB_id=794360 PYG29_RS04990 WP_309619031.1 1084883..1085359(-) (recX) [Snodgrassella communis strain B10998]
MKQKISLRARAITILARQEISRAELARKLRPHVGEGDNLEALLDELEQRHWQSDARYTETYINSKSRLHGNLRLQQSLKQ
KGVDAELIVDYLPDKDTQINNAVIVLQKKYRKPPADLKEKHKYMHFLAYRGFSMDIIHAAIQQAWTDISLPDEDEYWQ

Nucleotide


Download         Length: 477 bp        

>NTDB_id=794360 PYG29_RS04990 WP_309619031.1 1084883..1085359(-) (recX) [Snodgrassella communis strain B10998]
ATGAAGCAAAAAATCAGTTTACGCGCCCGTGCCATCACCATACTGGCACGGCAGGAAATCAGCCGTGCCGAACTGGCACG
TAAACTGCGTCCCCATGTTGGCGAGGGTGATAATCTGGAAGCCTTGCTGGATGAGCTAGAACAGCGGCACTGGCAGTCAG
ATGCACGTTATACAGAAACTTATATCAACAGTAAAAGCAGGCTGCATGGCAATCTGCGTTTGCAACAAAGCCTGAAACAA
AAAGGAGTGGATGCTGAGCTGATTGTAGACTATTTACCAGACAAAGACACGCAAATAAATAATGCTGTGATTGTATTGCA
GAAAAAATATCGCAAACCACCGGCTGATTTGAAAGAAAAACACAAATATATGCATTTTCTTGCCTATCGTGGTTTTAGTA
TGGATATTATTCATGCGGCAATCCAGCAGGCATGGACAGATATTTCCCTGCCCGATGAAGATGAATACTGGCAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

49.367

100

0.494