Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PYG29_RS04870 Genome accession   NZ_CP118686
Coordinates   1053875..1056058 (-) Length   727 a.a.
NCBI ID   WP_309619017.1    Uniprot ID   -
Organism   Snodgrassella communis strain B10998     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048875..1061058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYG29_RS04850 (PYG29_04850) - 1049214..1050407 (-) 1194 WP_309619015.1 amino acid aminotransferase -
  PYG29_RS04855 (PYG29_04855) trmB 1050516..1051223 (-) 708 WP_309619016.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PYG29_RS04860 (PYG29_04860) aroB 1051284..1052366 (-) 1083 WP_239424089.1 3-dehydroquinate synthase -
  PYG29_RS04865 (PYG29_04865) - 1052373..1052915 (-) 543 WP_239424090.1 shikimate kinase -
  PYG29_RS04870 (PYG29_04870) pilQ 1053875..1056058 (-) 2184 WP_309619017.1 type IV pilus secretin PilQ Machinery gene
  PYG29_RS04875 (PYG29_04875) - 1056095..1056631 (-) 537 WP_239424092.1 pilus assembly protein PilP -
  PYG29_RS04880 (PYG29_04880) - 1056686..1057333 (-) 648 WP_239424093.1 type 4a pilus biogenesis protein PilO -
  PYG29_RS04885 (PYG29_04885) - 1057348..1058016 (-) 669 WP_239424094.1 PilN domain-containing protein -
  PYG29_RS04890 (PYG29_04890) pilM 1058018..1059064 (-) 1047 WP_309619018.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 79682.38 Da        Isoelectric Point: 9.1578

>NTDB_id=794359 PYG29_RS04870 WP_309619017.1 1053875..1056058(-) (pilQ) [Snodgrassella communis strain B10998]
MKIKTISILSTLGLGLLSQSLLAGNITAINVGTLQNQQRLIKIQFDRDPTLPRGFTTENPARIALDFDDTGLTVPQNLLK
FNDSVLQQIEAGQTSARTRVLLSLAKAGQYNATIKDNEVWIYVQESLPEKIKGKGKQVPLINATPVLNSSSYPASNNITE
QVISHQTVSADNNISNATVPVSVDFQKGKNGSGVVSIIGLNGKVQPVIKRNPSSLTLTYKNLPLLTELQRNLDVTDFSTP
VRSIRLRRLGNDTEVNIQMQGNWEYNQIKSGNNLIVEVSRKFDLDSEGLKNTNKSFKGKRVSLDFQDIDVRTILQILAKE
SGMNIVASDSVQGKMTISLKDVPWDQALNLVMESRNLDMRRNGNVINVAPREELLSRDTATLEQQKKIDDLGPLLSQTFQ
LKYRSVEDFRKILKLSEDGKSSDPEHSILSPRGSALMDSATNNLIITDISSVIKKFEKLIAQVDVPSQQVLIEARIVETT
DSFARELGTKFGYNRHTGRNIIGGHITENNWSNAGGGSGSATFDSPNINLGVTNPTSIVSWVHNFASGALFLELSASQSE
GKTKIISSPRVLTQDRKEAKIESGYEVPYQEATSSGATSVSFKDAVLGLKVTPQITPDGNIIMTLNVQNDHPVACSNVAA
DVTRSGDICLQKRTVNTQTMIENGGTLIIGGIYNENNEYGTSKVPLLGDIPGIGNLFKYKKNKQDRSEVLVFITPRIVES
TNTPLKY

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=794359 PYG29_RS04870 WP_309619017.1 1053875..1056058(-) (pilQ) [Snodgrassella communis strain B10998]
ATGAAAATTAAAACCATATCTATTTTATCCACTCTGGGTCTGGGTTTACTGAGTCAGAGTCTACTGGCGGGAAATATTAC
CGCTATCAATGTCGGCACTTTGCAAAATCAACAGCGGCTGATTAAAATTCAGTTTGATAGAGATCCTACACTGCCACGAG
GTTTTACTACCGAGAATCCGGCACGGATTGCACTGGATTTTGACGACACTGGATTAACAGTCCCACAAAATCTGCTAAAA
TTTAATGACTCAGTTTTACAACAAATTGAAGCTGGTCAGACCTCAGCCCGTACACGCGTTTTACTTTCTCTAGCCAAAGC
GGGTCAGTACAATGCCACCATTAAAGATAATGAAGTCTGGATTTATGTACAGGAATCACTTCCTGAAAAAATTAAAGGAA
AAGGCAAACAGGTTCCGCTTATCAACGCTACTCCCGTATTAAACTCATCATCCTATCCAGCAAGCAACAATATAACAGAA
CAGGTGATCAGCCATCAGACAGTAAGCGCAGATAACAATATATCTAATGCAACTGTTCCTGTTAGTGTAGACTTTCAAAA
AGGTAAAAATGGTAGCGGCGTAGTCTCTATAATCGGGCTAAATGGCAAAGTCCAACCTGTGATCAAACGTAATCCATCCA
GTTTGACATTAACCTATAAAAATCTACCTTTATTAACCGAATTGCAACGCAATCTAGATGTTACCGATTTTAGTACGCCG
GTACGCTCTATTCGCTTACGCCGACTAGGTAACGATACAGAAGTTAATATCCAGATGCAGGGTAATTGGGAATATAATCA
GATTAAAAGCGGTAATAATTTGATTGTAGAGGTATCCCGTAAGTTTGATTTAGACAGCGAGGGATTAAAAAATACCAATA
AATCTTTTAAAGGTAAACGCGTTTCTTTAGACTTTCAAGATATTGATGTTCGTACCATCTTACAAATTCTGGCAAAAGAA
TCCGGTATGAATATTGTCGCCAGCGACAGTGTTCAAGGAAAAATGACCATATCATTAAAAGACGTTCCTTGGGATCAGGC
TTTAAATCTGGTAATGGAATCCCGTAATCTGGATATGCGTCGTAATGGCAACGTAATTAATGTTGCACCACGTGAGGAAT
TGTTGTCCCGTGATACGGCTACTCTTGAACAGCAAAAGAAAATTGATGATTTAGGACCACTACTTTCTCAAACTTTTCAG
CTGAAATACCGGAGCGTAGAAGACTTCAGAAAAATTCTTAAACTTTCAGAGGATGGGAAAAGTTCGGATCCAGAACATAG
CATTTTAAGCCCTCGAGGTAGTGCATTAATGGATTCAGCTACTAACAACCTGATTATTACAGATATCAGTAGTGTCATTA
AAAAATTTGAAAAATTAATAGCACAAGTAGATGTTCCCTCCCAACAAGTACTGATTGAAGCACGAATTGTAGAAACTACC
GATAGTTTTGCTCGTGAATTAGGTACTAAGTTCGGTTATAACCGTCATACAGGCAGAAATATAATTGGGGGACATATAAC
AGAAAATAATTGGAGTAATGCTGGTGGTGGTAGTGGTTCAGCTACATTTGACTCCCCAAATATTAATCTTGGTGTAACCA
ATCCAACTTCAATTGTTTCTTGGGTACATAATTTTGCTTCAGGGGCATTGTTCCTAGAACTTTCGGCATCCCAAAGTGAA
GGTAAAACCAAAATCATTTCGTCACCAAGAGTATTAACTCAGGATCGTAAAGAAGCCAAAATTGAATCTGGTTACGAGGT
TCCCTATCAGGAAGCAACTTCTAGCGGAGCTACCTCTGTTAGCTTCAAGGATGCAGTATTGGGGTTAAAAGTTACACCAC
AAATCACTCCAGATGGCAATATAATTATGACATTGAATGTACAAAATGATCATCCGGTTGCTTGCTCAAATGTTGCAGCT
GATGTGACACGCTCTGGTGATATTTGTTTGCAAAAAAGAACCGTTAACACCCAGACCATGATAGAAAATGGTGGTACATT
AATTATTGGTGGTATTTATAATGAAAACAATGAATACGGCACTAGTAAAGTACCTTTATTAGGTGATATTCCAGGTATCG
GCAACTTATTCAAATACAAGAAAAATAAACAGGACCGTAGTGAAGTACTGGTCTTCATTACACCACGTATAGTTGAATCC
ACTAATACGCCGCTGAAATATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(397-469)

AMIN domain (AMIN)

(40-116)

Secretin and TonB N terminus short domain (STN)

(324-369)

Bacterial type II and III secretion system protein (Secretin)

(557-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

47.709

100

0.487
  pilQ Neisseria meningitidis MC58

51.361

75.791

0.389
  pilQ Neisseria meningitidis M1080

51.18

75.791

0.388