Detailed information NTG0794348

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PYG29_RS01370
• Genome accession: NZ_CP118686
• Coordinates: 307587..308879 (+)
• Length: 430 a.a.
• NCBI ID: WP_309618722.1
• Uniprot ID: -
• Organism: Snodgrassella communis strain B10998
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 302587..313879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYG29_RS01340 (PYG29_01345)	bioH	302968..303720 (-)	753	WP_309618720.1	pimeloyl-ACP methyl ester esterase BioH	-
PYG29_RS01345 (PYG29_01350)	-	303719..304429 (+)	711	WP_309618721.1	ComF family protein	-
PYG29_RS01350 (PYG29_01355)	-	304753..305502 (+)	750	WP_275416185.1	septal ring lytic transglycosylase RlpA family protein	-
PYG29_RS01355 (PYG29_01360)	ruvA	305582..306160 (+)	579	WP_093092555.1	Holliday junction branch migration protein RuvA	-
PYG29_RS01360 (PYG29_01365)	-	306202..306750 (+)	549	WP_093092557.1	5'-3'-deoxyribonucleotidase	-
PYG29_RS01365 (PYG29_01370)	-	306788..307402 (+)	615	WP_037491625.1	Type 1 glutamine amidotransferase-like domain-containing protein	-
PYG29_RS01370 (PYG29_01375)	pilA	307587..308879 (+)	1293	WP_309618722.1	signal recognition particle-docking protein FtsY	Machinery gene
PYG29_RS01375 (PYG29_01380)	-	309039..311951 (+)	2913	WP_309618723.1	reverse transcriptase domain-containing protein	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 45846.29 Da
• Isoelectric Point: 4.6464

>NTDB_id=794348 PYG29_RS01370 WP_309618722.1 307587..308879(+) (pilA) [Snodgrassella communis strain B10998]
MFRFFKRKKNTEPAVEQPVSTPSQPEIIEQPQDATAEPAAAETTVKTEAEPNHPTTAEAAPADEATAQPATETAEEIIVP
TVVDEPAAIVTTTETAPIQTATSENAVVIPVAPAETSSEADKPAKLGWAARLKQGLSKSRNHMAKSLAAVFGGGKIDEDL
YEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLLPLQQPLILPTDKKPFVIMMAGVNGAGK
TTSIGKLAKYFQGQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDVVLADTAGRL
PTQLHLMEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVSFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIP
VRFIGVGEGIDDLRPFDARAFVDALIEDEE

Nucleotide

• Length: 1293 bp

>NTDB_id=794348 PYG29_RS01370 WP_309618722.1 307587..308879(+) (pilA) [Snodgrassella communis strain B10998]
ATGTTTCGATTTTTTAAAAGAAAAAAAAATACTGAGCCAGCAGTGGAACAACCCGTATCCACGCCCAGTCAGCCAGAAAT
TATAGAGCAGCCACAAGATGCAACTGCTGAGCCAGCCGCGGCTGAAACAACTGTTAAAACTGAAGCCGAACCCAACCACC
CTACTACAGCCGAAGCAGCACCAGCTGACGAAGCAACTGCCCAACCGGCCACTGAGACAGCCGAAGAAATCATCGTACCG
ACAGTGGTAGATGAGCCGGCAGCTATTGTTACAACCACAGAAACAGCACCAATTCAGACCGCGACAAGTGAAAATGCCGT
GGTTATCCCAGTTGCACCAGCAGAAACCAGTAGCGAGGCAGATAAACCGGCCAAGCTTGGTTGGGCAGCACGCTTAAAAC
AGGGATTGAGCAAATCGCGTAACCACATGGCCAAATCGCTGGCCGCTGTGTTTGGCGGTGGCAAAATTGATGAAGACCTG
TACGAGGAGCTGGAAACCGTACTGCTGACTAGCGATATGGGTATTGAAGCCACCGAAAAACTGCTGGCACAGGTACGCCA
GCGTGTTACCCTGAAAGGGCTGAAAAACGGTAACGAACTGCGCAGTGCCCTGAAAGAAGCATTGTATGAATTATTGCTGC
CCCTACAGCAGCCCCTGATTTTACCCACAGATAAAAAGCCGTTTGTGATTATGATGGCTGGTGTCAATGGCGCAGGCAAA
ACCACCAGCATCGGTAAACTGGCTAAATATTTTCAGGGTCAAGGTAAAAGCGTACTATTGGCCGCCGGTGATACCTTCCG
CGCTGCTGCGCGCGAACAGTTGCAGCAATGGGGAGAGCGCAATAACGTTACTGTAATTGCACAGGAATCTGGTGATTCGG
CTGCGGTTTGCTTTGATGCACTGGAAGCAGCCAAGGCGCGCGGTATTGATGTGGTATTGGCCGATACTGCTGGCCGACTG
CCTACCCAGCTACATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTACTGCAAAAATCCCTGCCTGAAGCCCCGCATGA
AGTGATGCTGGTACTGGATGCCAACGTTGGCCAGAATGCCATCAATCAAGTAGTCTCTTTCGACGATGCCCTTGGCTTAA
CCGGCCTGATTGTTTCCAAACTCGATGGCACCGCCAAAGGTGGTATTCTCGCCGCACTGGCGGCCAAACGCCCTATTCCG
GTACGTTTTATCGGTGTAGGTGAAGGCATCGATGATTTACGCCCGTTTGATGCACGCGCGTTTGTGGATGCGTTGATTGA
AGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (145-208)

• SRP54-type protein, GTPase domain (SRP54) (227-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.419	100	0.644