Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q7W79_RS06525 Genome accession   NZ_CP131930
Coordinates   1506430..1507365 (-) Length   311 a.a.
NCBI ID   WP_178981196.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501430..1512365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS06505 (Q7W79_06505) - 1503100..1504086 (+) 987 WP_031813173.1 helix-turn-helix domain-containing protein -
  Q7W79_RS06510 (Q7W79_06510) cueR 1504295..1504681 (+) 387 WP_005486235.1 Cu(I)-responsive transcriptional regulator -
  Q7W79_RS06515 (Q7W79_06515) vctC 1504729..1505484 (-) 756 WP_005486233.1 iron chelate ABC transporter ATP-binding protein VctC -
  Q7W79_RS06520 (Q7W79_06520) vctG 1505487..1506437 (-) 951 WP_273978509.1 iron chelate uptake ABC transporter permease subunit VctG -
  Q7W79_RS06525 (Q7W79_06525) ceuB 1506430..1507365 (-) 936 WP_178981196.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  Q7W79_RS06530 (Q7W79_06530) - 1507388..1508296 (-) 909 WP_015313100.1 siderophore ABC transporter substrate-binding protein -
  Q7W79_RS06535 (Q7W79_06535) - 1508460..1509140 (-) 681 WP_021452628.1 Crp/Fnr family transcriptional regulator -
  Q7W79_RS06540 (Q7W79_06540) - 1509343..1510074 (-) 732 WP_025442665.1 nucleoside phosphorylase -
  Q7W79_RS06545 (Q7W79_06545) pnuC 1510086..1510817 (-) 732 WP_023584864.1 nicotinamide riboside transporter PnuC -
  Q7W79_RS06550 (Q7W79_06550) - 1510978..1511196 (-) 219 WP_021485268.1 hypothetical protein -
  Q7W79_RS06555 (Q7W79_06555) cytR 1511349..1512359 (-) 1011 WP_021485288.1 substrate-binding domain-containing protein Regulator

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33694.36 Da        Isoelectric Point: 8.9148

>NTDB_id=794274 Q7W79_RS06525 WP_178981196.1 1506430..1507365(-) (ceuB) [Vibrio parahaemolyticus strain RP0132]
MKKLLLTLVVLSTVSLFVGVADMTPQQLFSGDAKALELFFTSRIPRLFAILLAGAGLSIAGLVMQQISQNRFAAPSTTGT
IECAMLGYVMSVVFFGDGDHLWLVFGISVLGTLTFVNFIQRIQFKSVVFVPLVGIIFGNVIESMTTFIAYKYDALQSLSA
WSVANFANILRGDFELLYIAVPMVILSYLFAARISAVGIGKDFAVNLGLNYQQVVTIGVLLVSIMSASVVMIVGQLPFLG
LIVPNLVSHFYGDNLKKNIPLTAMYGAILVLGCDLVSRLIIFPHEMPISIVISILGGVVFITMLLRGKQHA

Nucleotide


Download         Length: 936 bp        

>NTDB_id=794274 Q7W79_RS06525 WP_178981196.1 1506430..1507365(-) (ceuB) [Vibrio parahaemolyticus strain RP0132]
TTGAAAAAGTTATTGCTAACCCTTGTGGTTTTAAGCACGGTTTCGTTGTTTGTTGGGGTGGCAGATATGACGCCCCAACA
ATTGTTTTCTGGCGATGCAAAAGCATTAGAGCTTTTCTTTACTAGCCGTATCCCACGTTTATTCGCAATTTTGCTTGCCG
GGGCAGGGCTTAGTATCGCTGGCCTTGTGATGCAGCAGATCAGTCAAAACCGTTTTGCCGCGCCTTCGACCACGGGGACA
ATCGAGTGTGCCATGTTGGGCTACGTAATGAGCGTGGTGTTCTTTGGCGATGGTGATCATCTTTGGTTGGTGTTTGGTAT
CTCCGTGCTTGGAACGCTTACGTTTGTGAATTTCATCCAACGTATCCAATTCAAAAGTGTGGTGTTTGTACCGCTCGTCG
GGATCATTTTCGGTAACGTTATTGAATCGATGACCACGTTCATCGCCTACAAGTACGATGCGCTCCAAAGCTTGAGTGCT
TGGTCGGTCGCGAACTTCGCCAACATTTTGCGGGGGGATTTTGAACTGCTCTACATTGCGGTTCCGATGGTGATTCTCAG
TTACTTGTTTGCCGCAAGAATCTCTGCGGTCGGTATTGGTAAAGACTTTGCCGTGAACTTGGGTTTGAACTATCAGCAAG
TGGTTACTATTGGCGTGCTGTTGGTGTCCATCATGTCCGCAAGTGTGGTGATGATAGTTGGTCAGCTGCCGTTTCTTGGC
CTTATTGTGCCGAACCTCGTCAGTCATTTTTACGGTGATAACCTGAAGAAAAACATTCCTTTAACCGCCATGTATGGTGC
CATATTGGTACTCGGCTGTGATTTGGTGAGTCGTTTGATCATCTTCCCTCATGAAATGCCAATTTCCATTGTGATCAGCA
TTTTAGGTGGCGTGGTATTCATTACGATGTTGCTAAGAGGTAAGCAGCATGCGTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

42.994

100

0.434