Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Q7W79_RS03100 Genome accession   NZ_CP131930
Coordinates   685103..685759 (+) Length   218 a.a.
NCBI ID   WP_031792346.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 680103..690759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS03080 (Q7W79_03080) - 680491..681447 (-) 957 WP_005499739.1 MoxR family ATPase -
  Q7W79_RS03085 (Q7W79_03085) - 681762..683678 (+) 1917 WP_140287306.1 methyl-accepting chemotaxis protein -
  Q7W79_RS03090 (Q7W79_03090) - 683735..683935 (+) 201 WP_005462979.1 chromosome segregation ATPase -
  Q7W79_RS03095 (Q7W79_03095) - 684203..684874 (+) 672 WP_273978355.1 LuxR C-terminal-related transcriptional regulator -
  Q7W79_RS03100 (Q7W79_03100) qstR 685103..685759 (+) 657 WP_031792346.1 cyclic-di-GMP-binding transcriptional regulator CpsQ Regulator
  Q7W79_RS03105 (Q7W79_03105) - 685967..686557 (+) 591 WP_021450607.1 calcium-binding protein -
  Q7W79_RS03110 (Q7W79_03110) - 686619..688337 (+) 1719 WP_273978356.1 type I secretion system permease/ATPase -
  Q7W79_RS03115 (Q7W79_03115) - 688312..689652 (+) 1341 WP_005462986.1 HlyD family type I secretion periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25104.86 Da        Isoelectric Point: 6.5001

>NTDB_id=794267 Q7W79_RS03100 WP_031792346.1 685103..685759(+) (qstR) [Vibrio parahaemolyticus strain RP0132]
MRNIMEQYTEKPEILMLTQQSLQSENFKEMLSRNTGTKITIIDAKNPSYHELIPERYFLLVDFSVDTPSDTLVYLKDSRK
VLGTIMLNLGYDLDTEELASWPHVKGIFGPGDSMEKVCQGLSAIIKGDNWLSRKLLDQLVNYYKGKESNNVVEPAIEVEL
TRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRNL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=794267 Q7W79_RS03100 WP_031792346.1 685103..685759(+) (qstR) [Vibrio parahaemolyticus strain RP0132]
ATGAGAAACATTATGGAACAGTACACGGAAAAGCCTGAAATCCTAATGCTCACTCAACAAAGTTTACAGAGTGAAAACTT
TAAGGAAATGCTTTCTAGAAATACAGGAACAAAGATAACGATCATCGATGCTAAAAACCCTAGCTACCATGAACTCATCC
CTGAACGTTATTTTTTATTGGTTGATTTCTCAGTTGATACGCCATCTGACACTTTAGTTTACTTGAAGGATAGCCGCAAA
GTGCTAGGTACAATCATGCTTAATCTGGGTTACGACTTAGATACTGAAGAACTTGCATCTTGGCCTCATGTAAAAGGTAT
ATTTGGCCCAGGGGATTCAATGGAGAAAGTGTGCCAAGGGTTAAGTGCCATTATTAAAGGAGATAATTGGCTATCAAGAA
AATTGCTGGATCAATTGGTAAATTATTACAAAGGAAAAGAATCGAATAACGTTGTAGAGCCTGCGATTGAAGTAGAACTG
ACACGGCGTGAAATACAAGTTCTGAAAATGTTGAAAGAAGGCGGTTCAAATATGGAAATAGCTGATTCACTATTTATCAG
TGAACATACGATTAAATCGCATCTATACAATATTTTTAGAAAGTTAGAAGTAAAAAATAGGACGCAAGCCACAAGTTGGG
CGAAAAGAAACCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

40.909

90.826

0.372