Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q7W79_RS01680 Genome accession   NZ_CP131930
Coordinates   353582..354436 (+) Length   284 a.a.
NCBI ID   WP_025622083.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 348582..359436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS01660 (Q7W79_01660) - 348885..350783 (-) 1899 WP_273978280.1 ATP-binding protein -
  Q7W79_RS01665 (Q7W79_01665) - 350852..351607 (+) 756 WP_005484702.1 ABC transporter substrate-binding protein -
  Q7W79_RS01670 (Q7W79_01670) ribA 351713..352774 (-) 1062 WP_005477438.1 GTP cyclohydrolase II -
  Q7W79_RS01675 (Q7W79_01675) - 353019..353219 (-) 201 WP_005477395.1 PA3496 family putative envelope integrity protein -
  Q7W79_RS01680 (Q7W79_01680) amiE 353582..354436 (+) 855 WP_025622083.1 ABC transporter ATP-binding protein Regulator
  Q7W79_RS01685 (Q7W79_01685) - 354433..355365 (+) 933 WP_025622084.1 ATP-binding cassette domain-containing protein -
  Q7W79_RS01690 (Q7W79_01690) - 355365..355832 (+) 468 WP_021484244.1 hypothetical protein -
  Q7W79_RS01695 (Q7W79_01695) - 356121..358091 (-) 1971 WP_020838338.1 replication initiator protein RctB domain-containing protein -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 32125.75 Da        Isoelectric Point: 6.4362

>NTDB_id=794263 Q7W79_RS01680 WP_025622083.1 353582..354436(+) (amiE) [Vibrio parahaemolyticus strain RP0132]
MSEINLSHAFHSEPVIQIRDLCVDYITDNGDFNAVKSVSFDIGKGEVFGLAGESGCGKSTIAFSINRLHKPPAFISGGQI
LFQGKDILRLSDKELSALRWSEIAMVFQSAMNSLNPVLTIQEQFADVLRHHQGLSNEQAKDRAEKLLDLVNIPRDRLREY
PHQFSGGMRQRLVIAIALSLNPKLIIMDEPTTALDVVVQREILQQIYQLREEFGFSVLFITHDLALMSQLCDRIAIMRHG
EIVEVNHAYEIRNHPQHPYTQKLWASFPNIHDVHKQPEQQGAPA

Nucleotide


Download         Length: 855 bp        

>NTDB_id=794263 Q7W79_RS01680 WP_025622083.1 353582..354436(+) (amiE) [Vibrio parahaemolyticus strain RP0132]
ATGAGTGAGATTAATTTAAGTCACGCCTTTCACAGCGAGCCGGTCATCCAGATCCGAGATTTGTGCGTGGACTACATCAC
CGACAATGGTGACTTTAATGCGGTGAAATCGGTCAGCTTTGATATTGGAAAAGGCGAAGTATTCGGCCTTGCTGGGGAAT
CTGGATGCGGAAAGAGTACCATCGCTTTTTCGATCAATCGTCTGCACAAGCCGCCCGCGTTTATCTCTGGTGGACAAATT
CTGTTCCAAGGTAAGGACATCTTACGTTTGTCCGATAAGGAGCTAAGCGCGCTGCGTTGGAGCGAAATCGCCATGGTATT
CCAAAGTGCCATGAACTCGCTTAATCCAGTACTGACCATTCAAGAGCAGTTTGCAGACGTCCTACGTCATCATCAAGGAC
TCAGCAACGAACAAGCCAAAGATCGCGCCGAAAAACTGCTCGATTTGGTGAACATCCCTCGAGATCGACTGCGTGAATAT
CCGCACCAGTTCTCTGGGGGAATGCGCCAAAGGCTGGTTATTGCCATCGCGCTGTCTTTAAACCCTAAGCTCATCATTAT
GGATGAACCAACGACAGCGCTTGATGTGGTGGTGCAGCGAGAGATTCTGCAACAAATTTATCAGCTGAGAGAAGAATTTG
GTTTCTCAGTTCTTTTCATCACCCACGATTTAGCCTTGATGAGCCAATTGTGCGACCGCATCGCCATCATGCGCCATGGT
GAGATCGTAGAAGTCAATCACGCTTACGAGATCCGCAATCACCCACAACACCCTTACACGCAAAAATTGTGGGCCTCGTT
CCCCAATATTCACGATGTTCACAAGCAGCCAGAGCAACAAGGAGCACCAGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(36-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42.529

91.901

0.391
  amiE Streptococcus thermophilus LMD-9

42.529

91.901

0.391
  amiE Streptococcus salivarius strain HSISS4

42.146

91.901

0.387
  oppD Streptococcus mutans UA159

39.464

91.901

0.363