Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PUL49_RS26635 Genome accession   NZ_CP118641
Coordinates   5716805..5717362 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5711805..5722362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUL49_RS26615 (PUL49_26600) pilR 5713081..5714418 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PUL49_RS26620 (PUL49_26605) thiO 5714464..5715558 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  PUL49_RS26625 (PUL49_26610) - 5715693..5716202 (+) 510 WP_043096282.1 Tfp pilus assembly protein FimT/FimU -
  PUL49_RS26630 (PUL49_26615) - 5716308..5716814 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  PUL49_RS26635 (PUL49_26620) pilV 5716805..5717362 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PUL49_RS26640 (PUL49_26625) pilW 5717359..5718183 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PUL49_RS26645 (PUL49_26630) pilX 5718180..5718767 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PUL49_RS26650 (PUL49_26635) pilY1 5718779..5722264 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=794247 PUL49_RS26635 WP_003119423.1 5716805..5717362(+) (pilV) [Pseudomonas aeruginosa strain P23]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=794247 PUL49_RS26635 WP_003119423.1 5716805..5717362(+) (pilV) [Pseudomonas aeruginosa strain P23]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995