Detailed information    

insolico Bioinformatically predicted

Overview


Name   fimV   Type   Machinery gene
Locus tag   PUN20_RS09330 Genome accession   NZ_CP118638
Coordinates   1991879..1994638 (+) Length   919 a.a.
NCBI ID   WP_003122265.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1991879..2035342 1991879..1994638 within 0


Gene organization within MGE regions


Location: 1991879..2035342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN20_RS09330 (PUN20_09325) fimV 1991879..1994638 (+) 2760 WP_003122265.1 motility hub landmark protein FimV Machinery gene
  PUN20_RS09335 (PUN20_09330) - 1994786..1995835 (-) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  PUN20_RS09340 (PUN20_09335) - 1995835..1996077 (-) 243 WP_003158850.1 DUF4224 domain-containing protein -
  PUN20_RS09345 (PUN20_09340) - 1996061..1996384 (-) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  PUN20_RS09350 (PUN20_09345) - 1996387..1997226 (-) 840 WP_051488605.1 hypothetical protein -
  PUN20_RS09355 (PUN20_09350) - 1997223..1997468 (-) 246 WP_034014243.1 hypothetical protein -
  PUN20_RS09360 (PUN20_09355) - 1997465..1997644 (-) 180 WP_034014242.1 hypothetical protein -
  PUN20_RS09365 (PUN20_09360) - 1997641..1997832 (-) 192 WP_050159539.1 hypothetical protein -
  PUN20_RS09370 (PUN20_09365) - 1997945..1998472 (-) 528 WP_023083761.1 hypothetical protein -
  PUN20_RS09375 (PUN20_09370) - 1998469..1999347 (-) 879 WP_169311278.1 hypothetical protein -
  PUN20_RS09380 (PUN20_09375) - 1999350..1999580 (-) 231 WP_031637080.1 Arc family DNA-binding protein -
  PUN20_RS09385 (PUN20_09380) - 1999660..2000427 (-) 768 WP_021205286.1 Rha family transcriptional regulator -
  PUN20_RS09390 (PUN20_09385) - 2000424..2000690 (-) 267 WP_021205287.1 hypothetical protein -
  PUN20_RS09395 (PUN20_09390) - 2001210..2001443 (-) 234 WP_021205288.1 hypothetical protein -
  PUN20_RS09400 (PUN20_09395) - 2001446..2001835 (-) 390 WP_043503287.1 LuxR C-terminal-related transcriptional regulator -
  PUN20_RS09405 (PUN20_09400) - 2001956..2002804 (-) 849 WP_003159046.1 helix-turn-helix transcriptional regulator -
  PUN20_RS09410 (PUN20_09405) - 2003249..2003587 (+) 339 WP_121410406.1 hypothetical protein -
  PUN20_RS09415 (PUN20_09410) - 2003927..2004244 (+) 318 WP_128695347.1 hypothetical protein -
  PUN20_RS09420 (PUN20_09415) - 2004241..2004528 (+) 288 WP_003119033.1 DUF3077 domain-containing protein -
  PUN20_RS09425 (PUN20_09420) - 2004525..2004833 (+) 309 WP_024928452.1 hypothetical protein -
  PUN20_RS09430 (PUN20_09425) - 2004830..2005105 (+) 276 WP_024928451.1 hypothetical protein -
  PUN20_RS09435 (PUN20_09430) - 2005102..2005593 (+) 492 WP_273647243.1 hypothetical protein -
  PUN20_RS09440 (PUN20_09435) - 2005590..2006384 (+) 795 WP_273647241.1 ORF6N domain-containing protein -
  PUN20_RS09445 (PUN20_09440) - 2006381..2006698 (+) 318 WP_023124654.1 hypothetical protein -
  PUN20_RS09450 (PUN20_09445) - 2006695..2007012 (+) 318 WP_034022338.1 hypothetical protein -
  PUN20_RS09455 (PUN20_09450) - 2007009..2007434 (+) 426 WP_019486507.1 hypothetical protein -
  PUN20_RS09460 (PUN20_09455) - 2007515..2008537 (+) 1023 WP_223813039.1 DUF1376 domain-containing protein -
  PUN20_RS09465 (PUN20_09460) - 2008531..2010342 (+) 1812 WP_003119041.1 AAA family ATPase -
  PUN20_RS09470 (PUN20_09465) - 2010339..2010617 (+) 279 WP_034002792.1 hypothetical protein -
  PUN20_RS09475 (PUN20_09470) - 2010614..2011003 (+) 390 WP_004353175.1 antiterminator Q family protein -
  PUN20_RS09480 (PUN20_09475) - 2011542..2012069 (+) 528 WP_025986887.1 Rha family transcriptional regulator -
  PUN20_RS09485 (PUN20_09480) - 2012154..2012486 (+) 333 WP_004353177.1 phage holin, lambda family -
  PUN20_RS09490 (PUN20_09485) - 2012483..2013094 (+) 612 WP_273647233.1 glycoside hydrolase family 19 protein -
  PUN20_RS09495 (PUN20_09490) - 2013108..2013338 (+) 231 WP_003085739.1 hypothetical protein -
  PUN20_RS09500 (PUN20_09495) - 2013345..2013815 (+) 471 WP_273647231.1 lysis system i-spanin subunit Rz -
  PUN20_RS09505 (PUN20_09500) - 2013812..2014555 (+) 744 WP_003159066.1 hypothetical protein -
  PUN20_RS09510 (PUN20_09505) - 2014675..2015220 (+) 546 WP_010791974.1 terminase small subunit -
  PUN20_RS09515 (PUN20_09510) - 2015192..2017156 (+) 1965 WP_058179733.1 terminase gpA endonuclease subunit -
  PUN20_RS09520 (PUN20_09515) - 2017147..2017362 (+) 216 WP_003159069.1 hypothetical protein -
  PUN20_RS09525 (PUN20_09520) - 2017362..2019008 (+) 1647 WP_019486499.1 phage portal protein -
  PUN20_RS09530 (PUN20_09525) - 2018980..2021061 (+) 2082 WP_033865214.1 ClpP-like prohead protease/major capsid protein fusion protein -
  PUN20_RS09535 (PUN20_09530) - 2021128..2021445 (+) 318 WP_003129701.1 capsid cement protein -
  PUN20_RS09540 (PUN20_09535) - 2021442..2021771 (+) 330 WP_010791970.1 hypothetical protein -
  PUN20_RS09545 (PUN20_09540) - 2021768..2022238 (+) 471 WP_010791969.1 hypothetical protein -
  PUN20_RS09550 (PUN20_09545) - 2022242..2022436 (+) 195 WP_010791968.1 hypothetical protein -
  PUN20_RS09555 (PUN20_09550) - 2022438..2023190 (+) 753 WP_010791967.1 hypothetical protein -
  PUN20_RS09560 (PUN20_09555) - 2023272..2023793 (+) 522 WP_050397059.1 GspH/FimT family pseudopilin -
  PUN20_RS09565 (PUN20_09560) - 2023865..2024392 (+) 528 WP_071535696.1 DUF4124 domain-containing protein -
  PUN20_RS09570 (PUN20_09565) - 2024457..2024759 (+) 303 WP_010791966.1 hypothetical protein -
  PUN20_RS09575 (PUN20_09570) - 2024862..2027345 (+) 2484 WP_023465052.1 tape measure protein -
  PUN20_RS09580 (PUN20_09575) - 2027385..2027906 (+) 522 WP_029528986.1 hypothetical protein -
  PUN20_RS09585 (PUN20_09580) - 2027906..2029603 (+) 1698 WP_126122946.1 hypothetical protein -
  PUN20_RS09590 (PUN20_09585) - 2029606..2030016 (+) 411 WP_033991823.1 hypothetical protein -
  PUN20_RS09595 (PUN20_09590) - 2030016..2030561 (+) 546 WP_050157683.1 hypothetical protein -
  PUN20_RS09600 (PUN20_09595) - 2030572..2030994 (+) 423 WP_033991819.1 hypothetical protein -
  PUN20_RS09605 (PUN20_09600) - 2031155..2032474 (+) 1320 WP_224965664.1 hypothetical protein -
  PUN20_RS09610 (PUN20_09605) - 2032496..2033083 (+) 588 WP_033991817.1 hypothetical protein -
  PUN20_RS09615 (PUN20_09610) - 2033076..2033267 (+) 192 WP_003159082.1 hypothetical protein -
  PUN20_RS09620 (PUN20_09615) - 2033272..2033832 (+) 561 WP_033991816.1 hypothetical protein -
  PUN20_RS09625 (PUN20_09620) - 2033833..2034114 (+) 282 WP_023103825.1 hypothetical protein -
  PUN20_RS09630 (PUN20_09625) - 2034709..2035011 (+) 303 WP_096222207.1 hypothetical protein -
  PUN20_RS09635 (PUN20_09630) - 2035008..2035250 (+) 243 WP_096222208.1 hypothetical protein -

Sequence


Protein


Download         Length: 919 a.a.        Molecular weight: 96903.13 Da        Isoelectric Point: 3.9481

>NTDB_id=794198 PUN20_RS09330 WP_003122265.1 1991879..1994638(+) (fimV) [Pseudomonas aeruginosa strain P9]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKALADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=794198 PUN20_RS09330 WP_003122265.1 1991879..1994638(+) (fimV) [Pseudomonas aeruginosa strain P9]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGCTCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCAGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTCGACGATCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAAGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGTGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997