Detailed information NTG0794122

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Herbaro_RS18870
• Genome accession: NZ_CP118632
• Coordinates: 4170550..4171677 (+)
• Length: 375 a.a.
• NCBI ID: WP_275011141.1
• Uniprot ID: -
• Organism: Herbaspirillum sp. WKF16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4165550..4176677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Herbaro_RS18845 (Herbaro_18845)	coaD	4165710..4166198 (-)	489	WP_079218081.1	pantetheine-phosphate adenylyltransferase	-
Herbaro_RS18850 (Herbaro_18850)	rsmD	4166235..4166882 (-)	648	WP_275011137.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
Herbaro_RS18855 (Herbaro_18855)	-	4166893..4168227 (-)	1335	WP_275011138.1	pitrilysin family protein	-
Herbaro_RS18860 (Herbaro_18860)	-	4168283..4168918 (-)	636	WP_275011139.1	ParA family protein	-
Herbaro_RS18865 (Herbaro_18865)	-	4168985..4170367 (-)	1383	WP_275011140.1	pitrilysin family protein	-
Herbaro_RS18870 (Herbaro_18870)	pilA	4170550..4171677 (+)	1128	WP_275011141.1	signal recognition particle-docking protein FtsY	Machinery gene
Herbaro_RS18875 (Herbaro_18875)	-	4171683..4172375 (+)	693	WP_275011142.1	ATP-binding cassette domain-containing protein	-
Herbaro_RS18880 (Herbaro_18880)	ftsX	4172372..4173295 (+)	924	WP_275011143.1	permease-like cell division protein FtsX	-
Herbaro_RS18885 (Herbaro_18885)	rpoH	4173742..4174611 (+)	870	WP_275011144.1	RNA polymerase sigma factor RpoH	-
Herbaro_RS18890 (Herbaro_18890)	-	4174679..4175272 (-)	594	WP_275011145.1	SCO family protein	-
Herbaro_RS18895 (Herbaro_18895)	cyoE	4175277..4176170 (-)	894	WP_275011146.1	heme o synthase	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39836.93 Da
• Isoelectric Point: 5.1468

>NTDB_id=794122 Herbaro_RS18870 WP_275011141.1 4170550..4171677(+) (pilA) [Herbaspirillum sp. WKF16]
MFSFFKKKPKPEAQPVLPPNPPAEVQTPVSQPEAPAVPADISPVIPEPVAPQAQPAAVDAIEEEAELVEAPQPTAEAKRS
WLSRLKSGLSKTSSNLTTLFVGARIDDELYEELESALLVSDAGVEATQWVLDELKKKVKAERLTEAAQVRTALRALLIDL
LQPLQRPLVLGREQPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVSVIAQESGD
PAAVAFDAVHSATARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIAKGMATAPHEVLLVIDGNTGQNALAQVKAFDDALG
LTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALLS

Nucleotide

• Length: 1128 bp

>NTDB_id=794122 Herbaro_RS18870 WP_275011141.1 4170550..4171677(+) (pilA) [Herbaspirillum sp. WKF16]
ATGTTTAGTTTCTTCAAGAAAAAGCCCAAGCCGGAAGCGCAGCCCGTCCTGCCGCCAAACCCGCCGGCAGAGGTGCAAAC
GCCAGTCAGCCAGCCTGAAGCGCCAGCCGTCCCCGCCGACATCAGCCCGGTGATTCCCGAGCCCGTCGCACCCCAGGCGC
AGCCCGCCGCCGTCGACGCCATCGAGGAAGAGGCCGAGCTGGTGGAAGCGCCGCAACCGACCGCCGAAGCCAAGCGCTCC
TGGCTGTCGCGCCTCAAGTCCGGGCTGTCCAAGACCTCCAGCAACCTGACCACGCTGTTCGTGGGCGCGCGCATCGACGA
CGAGCTCTACGAAGAGCTGGAGTCCGCGCTGCTGGTGTCCGACGCCGGCGTCGAGGCGACCCAATGGGTGCTGGACGAAT
TGAAGAAGAAGGTCAAGGCCGAGCGCCTGACCGAGGCCGCGCAGGTGCGCACCGCGCTGCGCGCGCTGCTGATCGACCTG
CTGCAGCCGTTGCAGCGCCCGCTGGTGCTGGGCCGCGAGCAGCCGCTGGTGATGATGATCGCCGGCGTCAACGGCGCCGG
CAAGACCACCACCATCGGCAAGCTGGCGCTGCACCTGCAGGCCCACGGCCAGTCGGTGCTGCTGGCCGCCGGCGACACCT
TCCGCGCCGCCGCGCGCGAGCAGCTGGCGGTCTGGGGCGAGCGCAACAACGTCTCGGTGATCGCCCAGGAATCGGGCGAC
CCGGCCGCGGTCGCCTTCGACGCCGTGCATTCGGCCACCGCCCGCGGCACCAACGTGGTCATGGTGGACACCGCCGGCCG
CTTGCCGACGCAGTTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTGATCGCCAAGGGCATGGCCACGGCGCCGC
ACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGACGACGCGCTGGGC
CTGACCGGCCTGGTCGTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCCTGGCAGCCATCGCCAAGACCCGCCCGGT
ACCGCTGTACTTCATCGGCGTGGGCGAGAAGATCGAAGACCTGCAGCCCTTCAACGCCACCGAATTTGTCGACGCCCTCC
TGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (176-374)

• SRP54-type protein, helical bundle domain (SRP54_N) (95-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.406	100	0.555