Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MusilaSJ_RS13655 Genome accession   NZ_CP118631
Coordinates   3426787..3428199 (-) Length   470 a.a.
NCBI ID   WP_274985534.1    Uniprot ID   -
Organism   Mucilaginibacter sp. SJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3421787..3433199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MusilaSJ_RS13630 (MusilaSJ_13630) - 3422362..3423669 (-) 1308 WP_274985530.1 M20/M25/M40 family metallo-hydrolase -
  MusilaSJ_RS13635 (MusilaSJ_13635) - 3423672..3425546 (-) 1875 WP_274985531.1 PDZ domain-containing protein -
  MusilaSJ_RS13640 (MusilaSJ_13640) - 3425676..3425954 (-) 279 WP_274985532.1 HepT-like ribonuclease domain-containing protein -
  MusilaSJ_RS13645 (MusilaSJ_13645) - 3425944..3426237 (-) 294 WP_112657309.1 nucleotidyltransferase domain-containing protein -
  MusilaSJ_RS13650 (MusilaSJ_13650) - 3426368..3426649 (+) 282 WP_274985533.1 hypothetical protein -
  MusilaSJ_RS13655 (MusilaSJ_13655) radA 3426787..3428199 (-) 1413 WP_274985534.1 DNA repair protein RadA Machinery gene
  MusilaSJ_RS13660 (MusilaSJ_13660) - 3428300..3430585 (-) 2286 WP_274985535.1 hypothetical protein -
  MusilaSJ_RS13665 (MusilaSJ_13665) - 3430515..3431504 (-) 990 WP_274985536.1 hypothetical protein -
  MusilaSJ_RS13670 (MusilaSJ_13670) - 3431670..3431837 (-) 168 WP_176628781.1 DUF3606 domain-containing protein -
  MusilaSJ_RS13675 (MusilaSJ_13675) - 3431971..3432210 (+) 240 WP_090534652.1 hypothetical protein -
  MusilaSJ_RS13680 (MusilaSJ_13680) - 3432367..3432606 (-) 240 WP_274985537.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51610.42 Da        Isoelectric Point: 6.2540

>NTDB_id=794100 MusilaSJ_RS13655 WP_274985534.1 3426787..3428199(-) (radA) [Mucilaginibacter sp. SJ]
MAKSKIAYFCQSCGFESPKWLGKCPSCQQWNTFVEEVIEKGNAAVPAWKPASTSQQRANKPVAVTEITYTEEHRVPTPDK
EFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALNMPNQKVLYVSGEESERQIKMRAERLASPEGGVIGEGAYILAETS
TQNIFKQIESLEPDMVVIDSIQTLHSAHIESTPGSVSQVRECTAELLRFAKETSTPVFLIGHITKDGMIAGPKILEHMVD
TVLQFEGDRHHVYRILRTIKNRFGSSSELGIYEMMGEGLREVSNPSEILLSHREAPLSGITISATLEGMRPMLIETQALV
STSAYGMPQRTATGFDTKRMSMLLAVLEKRCGFRLGAKDVFLNITGGIRVEDPAIDLGLAAAIISSHEDMPIPFKTCFAG
ELGLSGEIRAVNRVEQRIAEAQKLGFNQIFISKYNLPASGQDKKRMDLSRYDIDIKIVSSIEEVFSLLFG

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=794100 MusilaSJ_RS13655 WP_274985534.1 3426787..3428199(-) (radA) [Mucilaginibacter sp. SJ]
ATGGCCAAATCCAAGATCGCGTACTTTTGTCAAAGCTGTGGCTTTGAATCGCCCAAGTGGCTGGGTAAATGCCCGTCATG
CCAGCAATGGAACACTTTTGTTGAGGAGGTGATTGAAAAAGGCAATGCAGCGGTACCTGCCTGGAAGCCTGCATCAACCA
GTCAGCAGCGGGCCAATAAACCCGTGGCCGTAACGGAGATCACTTATACCGAAGAGCACCGTGTGCCAACTCCCGATAAA
GAGTTTAACCGCGTTTTGGGAGGAGGGATAGTGCCCGGTTCACTGGTATTGATAGGCGGAGAGCCGGGCATAGGCAAATC
AACCCTGATGCTGCAGCTTGCGCTCAATATGCCAAACCAAAAAGTTTTGTATGTATCGGGCGAGGAAAGTGAAAGGCAGA
TAAAAATGCGGGCCGAAAGGTTAGCTTCGCCCGAAGGGGGAGTCATAGGCGAAGGCGCTTATATACTGGCAGAAACTTCT
ACCCAAAACATATTTAAACAGATAGAATCATTAGAACCGGATATGGTGGTGATCGACTCGATCCAAACACTGCATTCGGC
ACATATCGAATCAACGCCCGGCAGTGTATCGCAGGTTAGGGAATGTACAGCCGAGCTATTACGCTTCGCCAAGGAAACCT
CGACACCGGTGTTTCTGATAGGCCATATCACTAAGGACGGCATGATAGCAGGCCCTAAAATACTGGAGCATATGGTTGAT
ACCGTGCTGCAGTTTGAGGGCGACAGGCATCATGTTTACCGCATATTGCGTACTATCAAAAACCGTTTCGGCTCGTCATC
TGAGCTGGGCATTTACGAAATGATGGGCGAGGGATTGAGGGAAGTATCCAATCCGTCAGAGATTCTGCTCTCACATAGGG
AGGCCCCCTTGAGCGGCATCACTATTTCGGCTACCTTAGAAGGGATGCGGCCAATGCTGATTGAAACCCAGGCCCTGGTT
AGCACTTCGGCATATGGGATGCCTCAGCGTACTGCTACCGGCTTTGATACCAAACGCATGAGCATGCTGCTGGCGGTATT
GGAAAAACGCTGTGGTTTTAGGTTGGGCGCAAAAGATGTATTCCTGAATATTACCGGCGGCATCAGGGTTGAAGACCCGG
CTATTGACCTTGGTTTGGCGGCAGCCATTATCTCATCGCACGAGGATATGCCCATCCCGTTCAAAACCTGTTTTGCAGGC
GAACTGGGACTTTCGGGCGAAATCAGGGCGGTAAACCGCGTGGAGCAACGCATTGCCGAAGCGCAGAAGCTTGGCTTTAA
CCAGATCTTTATCTCCAAATATAACCTCCCCGCCAGCGGCCAGGATAAAAAGCGCATGGATTTGTCCCGCTATGATATCG
ACATCAAAATAGTAAGCAGTATTGAAGAGGTTTTTAGTTTGTTGTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(332-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.318

93.617

0.509
  radA Streptococcus pneumoniae Rx1

50.106

100

0.502
  radA Streptococcus pneumoniae D39

50.106

100

0.502
  radA Streptococcus pneumoniae R6

50.106

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.106

100

0.502
  radA Streptococcus mitis NCTC 12261

50.106

100

0.502
  radA Streptococcus mitis SK321

52.283

93.191

0.487