Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWF83_RS17130 Genome accession   NZ_CP118629
Coordinates   3666267..3666809 (-) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain VWJL.P1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3661267..3671809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWF83_RS17100 (PWF83_17110) - 3661423..3661818 (+) 396 WP_031279757.1 transposase -
  PWF83_RS17105 (PWF83_17115) - 3662727..3663680 (-) 954 WP_275026703.1 DMT family transporter -
  PWF83_RS17110 (PWF83_17120) - 3663753..3664583 (-) 831 WP_132465743.1 AraC family transcriptional regulator -
  PWF83_RS17115 (PWF83_17125) - 3664710..3665237 (+) 528 WP_275026707.1 isochorismatase family protein -
  PWF83_RS17120 (PWF83_17130) parS 3665311..3665754 (+) 444 WP_058757556.1 type II toxin-antitoxin system Xre/ParS family antitoxin -
  PWF83_RS17125 (PWF83_17135) - 3665751..3666215 (+) 465 WP_058774932.1 RES family NAD+ phosphorylase -
  PWF83_RS17130 (PWF83_17140) ssb 3666267..3666809 (-) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PWF83_RS17135 (PWF83_17145) uvrA 3667031..3669859 (+) 2829 WP_021507843.1 excinuclease ABC subunit UvrA -
  PWF83_RS17140 (PWF83_17150) - 3670135..3671199 (+) 1065 WP_275026712.1 NAD(P)-dependent alcohol dehydrogenase -
  PWF83_RS17145 (PWF83_17155) - 3671200..3671556 (-) 357 WP_021507845.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=794091 PWF83_RS17130 WP_021507842.1 3666267..3666809(-) (ssb) [Pantoea dispersa strain VWJL.P1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=794091 PWF83_RS17130 WP_021507842.1 3666267..3666809(-) (ssb) [Pantoea dispersa strain VWJL.P1]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGTCAGGATAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGCAACGGCGGTGGCGCACCGATGGGCGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCACAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGTCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372