Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   IGS56_RS00260 Genome accession   NZ_AP022846
Coordinates   56281..56964 (-) Length   227 a.a.
NCBI ID   WP_071163116.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51281..61964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS00245 (JPHIA_00490) nrdR 52071..52520 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  IGS56_RS00250 (JPHIA_00500) recC 52575..55955 (-) 3381 WP_071163117.1 exodeoxyribonuclease V subunit gamma -
  IGS56_RS00255 (JPHIA_00510) comQ 56001..56288 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  IGS56_RS00260 (JPHIA_00520) comP 56281..56964 (-) 684 WP_071163116.1 DUF2572 family protein Machinery gene
  IGS56_RS00265 (JPHIA_00530) comO 56964..57680 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  IGS56_RS00270 (JPHIA_00540) comN 57680..58192 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IGS56_RS00275 (JPHIA_00550) suhB 58392..59195 (+) 804 WP_048951686.1 inositol-1-monophosphatase -
  IGS56_RS00280 (JPHIA_00560) nrfE 59304..61211 (+) 1908 WP_190811792.1 heme lyase NrfEFG subunit NrfE -
  IGS56_RS00285 (JPHIA_00570) - 61211..61741 (+) 531 WP_071163114.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25417.32 Da        Isoelectric Point: 9.5163

>NTDB_id=79394 IGS56_RS00260 WP_071163116.1 56281..56964(-) (comP) [Haemophilus influenzae strain TAMBA230]
MTIQKGIITLTILIFISGLLTVILLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGATDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=79394 IGS56_RS00260 WP_071163116.1 56281..56964(-) (comP) [Haemophilus influenzae strain TAMBA230]
ATGACTATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

97.357

100

0.974

Multiple sequence alignment