Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PVV54_RS03795 Genome accession   NZ_CP118607
Coordinates   887933..889300 (+) Length   455 a.a.
NCBI ID   WP_274908665.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 882933..894300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS03765 (PVV54_03765) cydB 883030..884037 (+) 1008 WP_274908660.1 cytochrome d ubiquinol oxidase subunit II -
  PVV54_RS03770 (PVV54_03770) - 884046..884201 (+) 156 WP_039613047.1 DUF2474 domain-containing protein -
  PVV54_RS03775 (PVV54_03775) - 884312..885436 (-) 1125 WP_274908661.1 methyltransferase -
  PVV54_RS03780 (PVV54_03780) - 885535..886242 (-) 708 WP_274908662.1 autoinducer binding domain-containing protein -
  PVV54_RS03785 (PVV54_03785) - 886454..887230 (+) 777 WP_274908663.1 ferredoxin--NADP reductase -
  PVV54_RS03790 (PVV54_03790) mscL 887336..887755 (-) 420 WP_274908664.1 large-conductance mechanosensitive channel protein MscL -
  PVV54_RS03795 (PVV54_03795) radA 887933..889300 (+) 1368 WP_274908665.1 DNA repair protein RadA Machinery gene
  PVV54_RS03800 (PVV54_03800) - 889373..890890 (-) 1518 WP_274908666.1 nucleobase:cation symporter-2 family protein -
  PVV54_RS03805 (PVV54_03805) - 891154..891516 (-) 363 WP_274908667.1 PilZ domain-containing protein -
  PVV54_RS03810 (PVV54_03810) - 891683..893749 (+) 2067 WP_274908668.1 carbon starvation CstA family protein -
  PVV54_RS03815 (PVV54_03815) - 893763..893960 (+) 198 WP_008094130.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48694.16 Da        Isoelectric Point: 6.8985

>NTDB_id=793932 PVV54_RS03795 WP_274908665.1 887933..889300(+) (radA) [Pseudomonas sp. PSKL.D1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESAGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=793932 PVV54_RS03795 WP_274908665.1 887933..889300(+) (radA) [Pseudomonas sp. PSKL.D1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGTGAGTG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGCTGGCGCGGCAGCGCCCAGCGGGCGTGCTGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACGCTGGCCGAGGTCAGCGTTGAAGAAATCCCTCGTTTCACCACCAGCAGCACCGAACTG
GACCGGGTGCTGGGCGGTGGCTTGGTAGACGGCTCGGTTGTGCTGATTGGTGGTGACCCCGGTATTGGCAAGTCGACCAT
CTTGCTGCAAACCCTGTGCAACATTGCCGTGGGCATGCCAGCACTGTATGTCACCGGTGAGGAATCCCAGCAGCAGGTTG
CCATGCGGTCGCGGCGCCTGGGCCTGCCACAGGATCAACTCAAGGTAATGACCGAAACCTGCATCGAAACCATCATCGCC
ACTGCCCGGGTGGAAAAGCCGCGGGTGATGGTCATCGATTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCGGCACC
CGGCGGCGTGGCCCAGGTGCGCGAGAGCACGGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TTGGCCACGTCACCAAGGAAGGTTCGCTGGCCGGGCCGCGTGTGCTGGAGCACATGGTGGACACGGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAAAACCGCTTTGGTGCGGTGAACGAACTGGGTGTGTTCGG
CATGACCGACCGGGGCCTGAAAGAGGTTTCCAACCCATCGGCGATCTTCCTTAACCGCACGCAGGAAGAAGTTCCGGGCA
GTGTGGTGATGGCCACCTGGGAAGGTACTCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCACCTGGCC
AACCCGCGACGCGTTACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCATCGCCATGGCGGTAT
TCCCACGCACGACCAGGACGTGTTCCTCAATGTGGTGGGTGGGGTGAAAGTGCTGGAGACTGCATCCGACCTGGCGTTGC
TGGCGGCGGTGATGTCCAGTTTGCGCAACCGGCCGTTGGCCCATGGGCTGCTGGTGTTCGGCGAGATCGGCCTGTCTGGG
GAAGTGCGGCCTGTGCCGAGCGGGCAGGAGCGGTTGAAGGAAGCGGCCAAACACGGGTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCCAAGGAGCCGCCAGCGGGTTTGCAGGTAATTGCAGTGACGCGGTTGGAACAGGCGCTGGATGCCTTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.791

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462