Detailed information NTG0793852

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: PUN47_RS12220
• Genome accession: NZ_CP118599
• Coordinates: 2614694..2618083 (+)
• Length: 1129 a.a.
• NCBI ID: WP_075988171.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 10M-VF
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2609694..2623083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUN47_RS12195 (PUN47_12195)	erpA	2610091..2610432 (-)	342	WP_020332030.1	iron-sulfur cluster insertion protein ErpA	-
PUN47_RS12200 (PUN47_12200)	hemL	2610741..2612033 (+)	1293	WP_032082210.1	glutamate-1-semialdehyde 2,1-aminomutase	-
PUN47_RS12205 (PUN47_12205)	-	2612102..2612260 (-)	159	WP_154184033.1	hypothetical protein	-
PUN47_RS12210 (PUN47_12210)	-	2612297..2613382 (+)	1086	WP_024373684.1	AI-2E family transporter	-
PUN47_RS12215 (PUN47_12215)	rsmC	2613467..2614489 (+)	1023	WP_274888517.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
PUN47_RS12220 (PUN47_12220)	chiS	2614694..2618083 (+)	3390	WP_075988171.1	response regulator	Regulator
PUN47_RS12225 (PUN47_12225)	-	2618778..2620448 (+)	1671	WP_020332024.1	ABC transporter substrate-binding protein	-
PUN47_RS12230 (PUN47_12230)	-	2620614..2621600 (+)	987	WP_044363926.1	ABC transporter permease	-
PUN47_RS12235 (PUN47_12235)	-	2621603..2622628 (+)	1026	WP_020332022.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127797.37 Da
• Isoelectric Point: 6.4051

>NTDB_id=793852 PUN47_RS12220 WP_075988171.1 2614694..2618083(+) (chiS) [Vibrio fluvialis strain 10M-VF]
MFRFNRKQKFKRLQNTLMLAFLVLSITPLTVTAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVIDYLTAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGVDIDQAREHAQQRYVPGSGDQIKTSVLPESSSYVGSERYRLLHKRYHWAYMELLKRSDF
DDILLVDINGNVVYSIFKNANYGTNLLTGKFKDSNLGQTFRQLEQQVSEHRKTNEDYTPVVLSDFVDENGRQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNSTSSMRTLLVGQDHRSRTLAYEQPEIDKSTQVIDWALNGSRSVGTYTNQAGEK
TIAAYAPINLKDLHWALVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDE
TMINTDRRDEIGRLAVSFERMQRSIREKMQLIKAQNKELESNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDINTTAVNLSNATRLVLELSNHLLGKKPIRI
INQVAENPVWVSADAQRLEQVLYNLIGNAIKYTSEGKIVISANQVDNHIRVQVVDTGQGIPAEQLEHIFEPLIQAGHDTS
RYRQGAGLGLSISRQLIELMRGSLYVSSQPMVGTTFSFTLPIASEQEIAAAQLTQLPHFQAPEFTELDLPENHSIPENPN
GPLLLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLKAVAEEKPELLLLDIMMPGMSGYQVCEELRKTYDHAQLPVIM
LTALNQTDDRVRGFEAGANDYLSKPFNKQELAARIIAHLTASKAEQRRIENAELQKELKHRAMVEASLLETQGRLLEQLE
SAPEAIVCIREDHKIRFANEAASRLFKRSQEQIKRSNADELIAPKYLLVEQDHYCGNVDIFVDDIRQHVNADVLRLPEGA
GLQAMYIFNVGGSINAARIHNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKASGDSQSKQDLMRAVLVDAMTSA
LNYWEKVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILDHCQEQGPERTYIEVQRD
KLQKLLTSE

Nucleotide

• Length: 3390 bp

>NTDB_id=793852 PUN47_RS12220 WP_075988171.1 2614694..2618083(+) (chiS) [Vibrio fluvialis strain 10M-VF]
ATGTTTAGGTTCAATCGGAAGCAAAAGTTTAAGCGCCTGCAGAATACTCTTATGCTGGCGTTCCTGGTTCTCAGCATCAC
CCCTCTGACGGTGACGGCAATCTTTTTCCTTCAATCTCACAGTAAAGACTTGCAGGAACAAAGCACATCGCACCTTCTGT
CAGTACGGGATACCAAACAGCAGCAAGTAATCGACTACCTCACGGCTAAAGAGTCTGAAGTGATGGGCTTTGTCCGCTCA
GAACTTGCTTACGCCAGTGGCGGTCGCTTCTATGGATTGGTTAACGCATTTCAACGCTTGGGAGTCGATATCGATCAGGC
GCGCGAGCATGCGCAGCAACGTTATGTGCCCGGTTCCGGCGACCAAATCAAAACCTCAGTGTTACCAGAGTCGAGCAGTT
ACGTCGGTAGCGAACGCTATCGCTTGTTGCATAAACGCTACCACTGGGCATATATGGAACTGCTTAAGCGATCCGACTTT
GACGATATTCTGTTGGTCGACATCAACGGCAACGTGGTGTATTCCATTTTTAAAAATGCCAACTACGGCACCAACCTGCT
GACGGGAAAATTTAAAGACAGTAATCTGGGTCAAACCTTTCGCCAACTAGAACAGCAAGTCAGCGAACACCGTAAAACCA
ATGAAGATTACACCCCTGTCGTACTGTCTGATTTTGTTGATGAAAATGGCCGTCAATATGCATGGATGGGCGCACCAATC
ATTCAGCAAGGCTACTTGCACAGTTATGCGATGTTCCGCCTGCCCAATAATGGCATTACCAAGCTGATTGCAGATACCAA
CAGCACCTCTTCAATGCGCACTCTGTTAGTCGGCCAGGATCATCGCTCGCGTACCCTCGCCTACGAGCAACCTGAGATCG
ATAAGAGTACTCAAGTGATTGATTGGGCGCTGAACGGCAGTCGTTCTGTTGGCACTTATACTAATCAGGCCGGGGAAAAA
ACCATTGCCGCCTACGCCCCTATCAACCTCAAAGATTTGCATTGGGCACTGGTGGTTGAACTACCAGAAAAAGAAGCCTT
TGCGCGCGTTCGTCAGTTGGAGAAGCTGTTCATCTTCGCCATGCTGACCGCAATTATTTTGGTGGTGATCGCCTCACATT
ATCTGTCTAACTTCATTACATCTCCGCTCCTTAAACTAACCTGGGCAGCGGAGCGTGTCTCCGCTGGCGACTTGGATGAA
ACCATGATCAACACCGATCGGCGTGATGAAATTGGTCGGTTGGCGGTGAGTTTTGAACGTATGCAACGCTCTATTCGCGA
GAAGATGCAACTGATTAAGGCGCAGAATAAAGAGTTGGAAAGCAATATTCAGGTCATTCGTAAACAGAACGATGAATTGC
AGTTGGCCAACAAACTGAAAGATGAATTTCTTGCCACAACTTCGCATGAACTCAGAACGCCTTTACATGGCATGATCGGT
ATTGCCGAGGCGCTGATTTCCGGCGCCAATGGCCCAATTAATGCGGCACACAAGTATCAGCTCGACATTATCATCAGTAG
CGGTCAACGACTGGCAACCTTGGTGGATGACTTGCTCGACTACCACAAGATGCGCTACGGCAATCTCGACATCAACACGA
CTGCCGTTAATCTGTCCAATGCCACTCGTTTGGTGCTCGAACTGTCTAATCATCTGTTGGGCAAAAAGCCAATCCGCATT
ATTAACCAAGTCGCCGAAAATCCGGTGTGGGTATCTGCCGATGCCCAGCGTTTGGAACAAGTGTTGTACAACCTGATCGG
CAACGCTATCAAATACACCTCGGAAGGTAAGATTGTCATCTCAGCCAATCAAGTGGATAACCATATTCGCGTTCAGGTCG
TGGATACCGGCCAAGGCATTCCGGCCGAACAGCTGGAACACATTTTTGAACCTCTGATTCAAGCCGGACATGACACCAGT
CGCTATCGTCAGGGCGCAGGACTGGGGCTATCCATCAGCCGTCAATTAATTGAGTTGATGCGTGGCTCGCTGTATGTCAG
CAGCCAACCTATGGTTGGCACTACCTTTAGTTTCACCCTGCCAATCGCGTCAGAACAAGAGATTGCTGCCGCACAACTGA
CTCAGCTACCCCATTTCCAGGCTCCTGAATTTACGGAACTGGATCTGCCTGAGAATCATAGCATCCCGGAAAATCCGAAC
GGCCCACTGCTGTTAGTCGCGGATGATGAGCCGGTTAACTTACGTGTTCTGGACAGCTTCCTTCGTTTAGAAGGCTATCG
TGTACGCACCGCACAGGATGGCAATGAAGTGTTGAAAGCTGTGGCTGAAGAGAAACCGGAGCTGCTATTGCTCGACATCA
TGATGCCCGGAATGAGTGGTTATCAGGTTTGTGAAGAGCTGCGTAAAACGTATGATCACGCTCAATTACCGGTAATTATG
CTGACCGCTTTGAACCAAACCGACGATCGCGTACGAGGCTTTGAAGCGGGTGCCAACGACTACCTGTCCAAACCTTTCAA
CAAACAGGAACTGGCTGCACGTATTATCGCGCACCTGACAGCGAGCAAAGCAGAACAACGTCGGATTGAAAACGCCGAGT
TGCAGAAAGAATTGAAGCACCGTGCGATGGTTGAGGCTAGTCTGCTGGAAACGCAAGGCCGTTTGTTGGAACAGCTGGAA
TCGGCACCGGAAGCCATTGTTTGTATTCGTGAAGATCACAAAATCCGCTTTGCCAATGAAGCCGCTTCGCGCCTGTTTAA
ACGTAGTCAGGAGCAAATCAAACGCTCTAACGCAGATGAGTTGATCGCTCCGAAGTATCTGCTGGTCGAGCAGGATCATT
ATTGTGGCAACGTCGATATTTTTGTCGATGATATTCGGCAACATGTCAACGCTGATGTCCTCCGCCTGCCGGAAGGCGCT
GGATTACAGGCAATGTATATCTTTAATGTGGGTGGCAGCATTAACGCTGCGCGTATTCATAATCTTGAAACCGCCGTTGA
AGCCCTATCGAGCTATGCCTTTGAAGGTGACAAGGATAAGCTGCAGCAACTCAAAGAACTGGGGGGAGAATTTACCCGCC
TGGCGGACAAAGCCTCAGGCGACAGTCAATCTAAGCAGGACTTGATGCGCGCCGTCTTGGTGGATGCGATGACGTCAGCC
CTCAACTATTGGGAAAAAGTCTCCGGGCAAAGCAAATTCACGTTCGCAGAACAAAGTGGGTTATGGCGCGTCTATCTGGA
CCGAAGCACGCTGCAGACCCGCACACTCGACAAGTATCTGCGTATCGAAACACTTCCTAAAACACCGCGGTGGCGCACGG
TACTCAATTCGCTGGATTACATTCTCGACCACTGTCAGGAGCAGGGGCCTGAACGTACCTACATTGAAGTACAACGCGAC
AAACTGCAAAAGCTGCTCACCTCTGAATAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

• Response regulator receiver domain (Response_reg) (725-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	84.765	100	0.848