Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | PUN47_RS06080 | Genome accession | NZ_CP118599 |
| Coordinates | 1317251..1318675 (-) | Length | 474 a.a. |
| NCBI ID | WP_274889259.1 | Uniprot ID | - |
| Organism | Vibrio fluvialis strain 10M-VF | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1316844..1357088 | 1317251..1318675 | within | 0 |
Gene organization within MGE regions
Location: 1316844..1357088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUN47_RS06075 (PUN47_06075) | - | 1316844..1317218 (-) | 375 | WP_020327588.1 | CidA/LrgA family protein | - |
| PUN47_RS06080 (PUN47_06080) | sbcB | 1317251..1318675 (-) | 1425 | WP_274889259.1 | exodeoxyribonuclease I | Machinery gene |
| PUN47_RS06085 (PUN47_06085) | - | 1318857..1320047 (+) | 1191 | WP_274889260.1 | tyrosine-type recombinase/integrase | - |
| PUN47_RS06090 (PUN47_06090) | - | 1320095..1322092 (-) | 1998 | WP_274889261.1 | tetratricopeptide repeat protein | - |
| PUN47_RS06095 (PUN47_06095) | - | 1322242..1322532 (-) | 291 | WP_274889262.1 | helix-turn-helix transcriptional regulator | - |
| PUN47_RS06100 (PUN47_06100) | - | 1322570..1322806 (-) | 237 | WP_202648991.1 | DUF7220 family protein | - |
| PUN47_RS06105 (PUN47_06105) | - | 1322870..1323244 (-) | 375 | WP_274889263.1 | hypothetical protein | - |
| PUN47_RS06110 (PUN47_06110) | - | 1323399..1323674 (-) | 276 | WP_202648993.1 | hypothetical protein | - |
| PUN47_RS06115 (PUN47_06115) | - | 1323839..1324141 (+) | 303 | WP_222769415.1 | hypothetical protein | - |
| PUN47_RS06120 (PUN47_06120) | - | 1324495..1325235 (-) | 741 | WP_274889265.1 | LexA family protein | - |
| PUN47_RS06125 (PUN47_06125) | - | 1325316..1325510 (+) | 195 | WP_222757017.1 | YdaS family helix-turn-helix protein | - |
| PUN47_RS06130 (PUN47_06130) | - | 1325583..1326131 (+) | 549 | WP_161417841.1 | hypothetical protein | - |
| PUN47_RS06135 (PUN47_06135) | - | 1326324..1327079 (+) | 756 | WP_238851785.1 | helix-turn-helix domain-containing protein | - |
| PUN47_RS06140 (PUN47_06140) | - | 1327076..1327804 (+) | 729 | WP_038126973.1 | ATP-binding protein | - |
| PUN47_RS06145 (PUN47_06145) | - | 1327801..1328370 (+) | 570 | WP_161417846.1 | MT-A70 family methyltransferase | - |
| PUN47_RS06150 (PUN47_06150) | - | 1328370..1328951 (+) | 582 | WP_274889268.1 | hypothetical protein | - |
| PUN47_RS06155 (PUN47_06155) | - | 1328980..1330344 (-) | 1365 | WP_238851788.1 | KAP family P-loop NTPase fold protein | - |
| PUN47_RS06160 (PUN47_06160) | - | 1330476..1331120 (+) | 645 | WP_274889269.1 | hypothetical protein | - |
| PUN47_RS06165 (PUN47_06165) | - | 1331124..1332326 (+) | 1203 | WP_274889270.1 | helix-turn-helix domain-containing protein | - |
| PUN47_RS06170 (PUN47_06170) | - | 1332496..1332975 (+) | 480 | WP_274889271.1 | lysozyme | - |
| PUN47_RS06175 (PUN47_06175) | - | 1332972..1333451 (+) | 480 | WP_274889272.1 | lysis protein | - |
| PUN47_RS06180 (PUN47_06180) | - | 1333455..1333736 (+) | 282 | WP_202645929.1 | HP1 family phage holin | - |
| PUN47_RS06185 (PUN47_06185) | - | 1334058..1334531 (+) | 474 | WP_237733667.1 | DUF1441 family protein | - |
| PUN47_RS06190 (PUN47_06190) | - | 1334512..1336602 (+) | 2091 | WP_274889274.1 | terminase gpA endonuclease subunit | - |
| PUN47_RS06195 (PUN47_06195) | - | 1336599..1336817 (+) | 219 | WP_020327558.1 | hypothetical protein | - |
| PUN47_RS06200 (PUN47_06200) | - | 1336810..1338300 (+) | 1491 | WP_274889276.1 | phage portal protein | - |
| PUN47_RS06205 (PUN47_06205) | - | 1338293..1340464 (+) | 2172 | WP_202645933.1 | head maturation protease, ClpP-related | - |
| PUN47_RS06210 (PUN47_06210) | - | 1340529..1340867 (+) | 339 | WP_274889278.1 | hypothetical protein | - |
| PUN47_RS06215 (PUN47_06215) | - | 1340942..1341211 (+) | 270 | WP_274889279.1 | hypothetical protein | - |
| PUN47_RS06220 (PUN47_06220) | - | 1341198..1341713 (+) | 516 | WP_237733669.1 | phage tail protein | - |
| PUN47_RS06225 (PUN47_06225) | - | 1341679..1342191 (+) | 513 | WP_202645936.1 | hypothetical protein | - |
| PUN47_RS06230 (PUN47_06230) | - | 1342148..1342849 (+) | 702 | WP_237733670.1 | phage baseplate assembly protein V | - |
| PUN47_RS06235 (PUN47_06235) | - | 1342846..1343178 (+) | 333 | WP_020327550.1 | hypothetical protein | - |
| PUN47_RS06240 (PUN47_06240) | - | 1343175..1344155 (+) | 981 | WP_274889282.1 | baseplate J/gp47 family protein | - |
| PUN47_RS06245 (PUN47_06245) | - | 1344139..1344756 (+) | 618 | WP_274889283.1 | phage tail protein | - |
| PUN47_RS06250 (PUN47_06250) | - | 1344749..1345936 (+) | 1188 | WP_274889284.1 | phage tail protein | - |
| PUN47_RS06255 (PUN47_06255) | - | 1345939..1346367 (+) | 429 | WP_222802239.1 | tail fiber assembly protein | - |
| PUN47_RS06260 (PUN47_06260) | - | 1346460..1346663 (+) | 204 | WP_140229879.1 | hypothetical protein | - |
| PUN47_RS06265 (PUN47_06265) | - | 1346666..1347835 (+) | 1170 | WP_274889286.1 | phage tail protein | - |
| PUN47_RS06270 (PUN47_06270) | - | 1347828..1348304 (+) | 477 | WP_020327540.1 | phage major tail tube protein | - |
| PUN47_RS06275 (PUN47_06275) | - | 1348367..1349071 (+) | 705 | WP_274889289.1 | phage tail assembly protein | - |
| PUN47_RS06280 (PUN47_06280) | - | 1349183..1351909 (+) | 2727 | WP_274889290.1 | phage tail tape measure protein | - |
| PUN47_RS06285 (PUN47_06285) | - | 1351912..1352277 (+) | 366 | WP_020327537.1 | phage tail protein | - |
| PUN47_RS06290 (PUN47_06290) | - | 1352480..1353448 (+) | 969 | WP_274889291.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PUN47_RS06295 (PUN47_06295) | - | 1353445..1354686 (+) | 1242 | WP_274889292.1 | tyrosine-type recombinase/integrase | - |
| PUN47_RS06300 (PUN47_06300) | - | 1354845..1355051 (+) | 207 | WP_338129540.1 | helix-turn-helix domain-containing protein | - |
| PUN47_RS06305 (PUN47_06305) | - | 1355032..1355949 (-) | 918 | WP_274889295.1 | hypothetical protein | - |
| PUN47_RS06310 (PUN47_06310) | - | 1356345..1357088 (+) | 744 | WP_233939875.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 474 a.a. Molecular weight: 54333.74 Da Isoelectric Point: 5.0071
>NTDB_id=793850 PUN47_RS06080 WP_274889259.1 1317251..1318675(-) (sbcB) [Vibrio fluvialis strain 10M-VF]
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLPEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIDPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLPEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIDPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS
Nucleotide
Download Length: 1425 bp
>NTDB_id=793850 PUN47_RS06080 WP_274889259.1 1317251..1318675(-) (sbcB) [Vibrio fluvialis strain 10M-VF]
ATGAATAACTCAGAACAACCGACATTCTTCTTCTTTGACTACGAGACGTGGGGCACCAGTCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATCACTGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTACCTGAGCCG
GAGTTTATTGCCAAAATTCACGCGGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTATCGCAACTTTCTCGATCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTTGATGTGATGCGTGCCTGTCATGCGCTGCGCCCAGAAGGTATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTTAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCATGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCAACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCTGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCC
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCAGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAAAGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCGACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAG
CGCATCGATCCGCTGCTGTTTCGCTATCGCGCACGTAATTTCCCTTGGACGCTGGATGAAAATGACCAGCGTCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCTTCTTAG
ATGAATAACTCAGAACAACCGACATTCTTCTTCTTTGACTACGAGACGTGGGGCACCAGTCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATCACTGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTACCTGAGCCG
GAGTTTATTGCCAAAATTCACGCGGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTATCGCAACTTTCTCGATCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTTGATGTGATGCGTGCCTGTCATGCGCTGCGCCCAGAAGGTATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTTAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCATGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCAACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCTGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCC
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCAGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAAAGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCGACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAG
CGCATCGATCCGCTGCTGTTTCGCTATCGCGCACGTAATTTCCCTTGGACGCTGGATGAAAATGACCAGCGTCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCTTCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
82.875 |
99.789 |
0.827 |