Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PWW26_RS20160 Genome accession   NZ_CP118597
Coordinates   552120..553217 (-) Length   365 a.a.
NCBI ID   WP_005453580.1    Uniprot ID   A0A9X3RVB5
Organism   Vibrio harveyi strain fish10     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 547120..558217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS20140 - 547185..547640 (-) 456 WP_274879734.1 Lrp/AsnC family transcriptional regulator -
  PWW26_RS20145 - 547791..548717 (+) 927 WP_074051705.1 DMT family transporter -
  PWW26_RS20150 - 548811..549473 (+) 663 WP_047515332.1 PilZ domain-containing protein -
  PWW26_RS20155 luxQ 549541..552120 (-) 2580 WP_274879735.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  PWW26_RS20160 luxP 552120..553217 (-) 1098 WP_005453580.1 substrate-binding domain-containing protein Regulator
  PWW26_RS20165 - 553567..553893 (-) 327 WP_274879736.1 GIY-YIG nuclease family protein -
  PWW26_RS20170 - 553890..554543 (-) 654 WP_269991395.1 YceH family protein -
  PWW26_RS20175 - 554637..554840 (-) 204 WP_009696233.1 hypothetical protein -
  PWW26_RS20180 - 555079..555393 (+) 315 WP_005453573.1 DUF496 family protein -
  PWW26_RS20185 - 555517..556854 (+) 1338 WP_005453572.1 MATE family efflux transporter -
  PWW26_RS20190 - 556997..557986 (-) 990 WP_269991393.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41582.03 Da        Isoelectric Point: 6.7059

>NTDB_id=793821 PWW26_RS20160 WP_005453580.1 552120..553217(-) (luxP) [Vibrio harveyi strain fish10]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=793821 PWW26_RS20160 WP_005453580.1 552120..553217(-) (luxP) [Vibrio harveyi strain fish10]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGTAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCGAAGCACACCTATTACAGCGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGACGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATCGCCATGGCA
GAAGCCATTAAGTGGGACTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63