Detailed information NTG0793804

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: PWW26_RS08880
• Genome accession: NZ_CP118596
• Coordinates: 1743939..1745360 (-)
• Length: 473 a.a.
• NCBI ID: WP_274878970.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain fish10
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1738939..1750360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW26_RS08855	-	1739633..1740283 (+)	651	WP_050921726.1	thiopurine S-methyltransferase	-
PWW26_RS08860	purT	1740360..1741535 (-)	1176	WP_274878968.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
PWW26_RS08865	cdd	1741684..1742571 (-)	888	WP_274878969.1	cytidine deaminase	-
PWW26_RS08870	-	1742827..1743504 (-)	678	WP_005445538.1	LrgB family protein	-
PWW26_RS08875	-	1743506..1743880 (-)	375	WP_005445537.1	CidA/LrgA family protein	-
PWW26_RS08880	sbcB	1743939..1745360 (-)	1422	WP_274878970.1	exodeoxyribonuclease I	Machinery gene
PWW26_RS08885	-	1745522..1746202 (-)	681	WP_005445535.1	DUF1826 domain-containing protein	-
PWW26_RS08890	-	1746424..1747797 (-)	1374	WP_114321185.1	L-cystine transporter	-
PWW26_RS08895	-	1747992..1748687 (-)	696	WP_274878971.1	NAD(P)H-binding protein	-
PWW26_RS08900	-	1749408..1750019 (+)	612	WP_274878972.1	flavin reductase family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54539.89 Da
• Isoelectric Point: 4.9808

>NTDB_id=793804 PWW26_RS08880 WP_274878970.1 1743939..1745360(-) (sbcB) [Vibrio harveyi strain fish10]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYACYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=793804 PWW26_RS08880 WP_274878970.1 1743939..1745360(-) (sbcB) [Vibrio harveyi strain fish10]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGTGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACGCTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGTATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGATTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTGGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	100	0.791