Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PWW26_RS03360 Genome accession   NZ_CP118596
Coordinates   674489..675007 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain fish10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 669489..680007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS03350 gshA 672209..673777 (+) 1569 WP_017817672.1 glutamate--cysteine ligase -
  PWW26_RS03355 - 673797..674402 (+) 606 WP_173364781.1 hypothetical protein -
  PWW26_RS03360 luxS 674489..675007 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PWW26_RS03365 - 675100..676374 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  PWW26_RS03370 - 676529..677323 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  PWW26_RS03375 ffh 677537..678919 (+) 1383 WP_005446242.1 signal recognition particle protein -
  PWW26_RS03380 rpsP 679130..679378 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  PWW26_RS03385 rimM 679407..679955 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=793795 PWW26_RS03360 WP_005448429.1 674489..675007(+) (luxS) [Vibrio harveyi strain fish10]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=793795 PWW26_RS03360 WP_005448429.1 674489..675007(+) (luxS) [Vibrio harveyi strain fish10]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855