Detailed information NTG0793792

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWW26_RS03230
• Genome accession: NZ_CP118596
• Coordinates: 651758..652741 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain fish10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 646758..657741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW26_RS03195	ftsB	646764..647045 (+)	282	WP_005452106.1	cell division protein FtsB	-
PWW26_RS03200	ispD	647047..647757 (+)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWW26_RS03205	ispF	647772..648248 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWW26_RS03210	truD	648294..649337 (+)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PWW26_RS03215	surE	649337..650113 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWW26_RS03220	-	650113..650739 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWW26_RS03225	-	650754..651677 (+)	924	WP_274878541.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWW26_RS03230	rpoS	651758..652741 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWW26_RS03235	mutS	652835..655396 (-)	2562	WP_274878542.1	DNA mismatch repair protein MutS	-
PWW26_RS03240	pncC	655482..655964 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
PWW26_RS03245	recA	656166..657209 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=793792 PWW26_RS03230 WP_005452115.1 651758..652741(+) (rpoS) [Vibrio harveyi strain fish10]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=793792 PWW26_RS03230 WP_005452115.1 651758..652741(+) (rpoS) [Vibrio harveyi strain fish10]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GTTGGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTCGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856