Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PWW24_RS16490 Genome accession   NZ_CP118590
Coordinates   3476219..3477202 (-) Length   327 a.a.
NCBI ID   WP_005452115.1    Uniprot ID   A0A812FCY7
Organism   Vibrio harveyi strain fish12     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3471219..3482202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW24_RS16480 - 3472027..3473367 (-) 1341 WP_140272598.1 site-specific integrase -
  PWW24_RS16485 mutS 3473540..3476125 (+) 2586 WP_274792435.1 DNA mismatch repair protein MutS -
  PWW24_RS16490 rpoS 3476219..3477202 (-) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PWW24_RS16495 - 3477283..3478206 (-) 924 WP_009698767.1 peptidoglycan DD-metalloendopeptidase family protein -
  PWW24_RS16500 - 3478221..3478847 (-) 627 WP_005452113.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  PWW24_RS16505 surE 3478847..3479623 (-) 777 WP_009698768.1 5'/3'-nucleotidase SurE -
  PWW24_RS16510 truD 3479623..3480666 (-) 1044 WP_050902432.1 tRNA pseudouridine(13) synthase TruD -
  PWW24_RS16515 ispF 3480712..3481188 (-) 477 WP_009698769.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PWW24_RS16520 ispD 3481203..3481913 (-) 711 WP_038899663.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PWW24_RS16525 ftsB 3481915..3482196 (-) 282 WP_005452106.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37236.10 Da        Isoelectric Point: 4.7232

>NTDB_id=793765 PWW24_RS16490 WP_005452115.1 3476219..3477202(-) (rpoS) [Vibrio harveyi strain fish12]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide


Download         Length: 984 bp        

>NTDB_id=793765 PWW24_RS16490 WP_005452115.1 3476219..3477202(-) (rpoS) [Vibrio harveyi strain fish12]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FCY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.856